Prunus mume (Japanese apricot): 103333507
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Entry
103333507 CDS
T03196
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04120
Ubiquitin mediated proteolysis
pmum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103333507
04120 Ubiquitin mediated proteolysis
103333507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmum04121
]
103333507
Enzymes [BR:
pmum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103333507
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103333507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
FlxA
zf-RING_16
zf-RING_11
zf-ANAPC11
zf-RING_5
zf-HC5HC2H
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
103333507
NCBI-ProteinID:
XP_008234576
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All DBs
Position
LG5:24828544..24832535
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AA seq
543 aa
AA seq
DB search
MMRLQTYAGISLVATLAIIYHAFSSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCTMWQL
TKKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHVRIVSFLGFLLVVDSLFLYSSISNLIKTQKASVSLFFSFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMYYG
VPLHLIRELYETFRNFKIRVADYVRYRKLTSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLLCGHLFHVPCLRSWLERQHTCPTCRALVVPPENGAGTAGGHRGSRSDAHQQGTGT
TAQGGGVAGDNLSQHEARLRAAAAAASIYEKSHVYPSANRLVWSPGYVALPQVQRQMADA
ANTESSGVSHSQLATPGGPSNLSSPQFPHYMFVPFEVPDVAYEERLGGDPNITASQLEAQ
KKFLQHQIEILQNQFQTLQKPKPKESMDTGPSASLDGKGKNVESSSSSVSDCGRHVELEE
IDS
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacctatgcggggattagcttggtagcaactctagcgattatttat
catgcatttagcagtagaggccagttttacccggccatggtttttttatcaacctccaag
atcagtttggtgctgcttctcaacatgggtctggtcattatgtgtactatgtggcaatta
actaaaaagctcttccttggatcactccgagaagccgaggtggagaggcttaatgagcag
tcatggagggaagtcatggagatcctctttgctattactattttcaggcaggacttctca
gtctcctttcttgctatggtcacagctctgctgttgatcaaggctttgcattggttggct
caaaagagggttgaatacattgagactaccccatccgtgcccatgctgtctcatgttcgg
attgtctcctttttgggattcttgcttgttgtagatagtctctttttgtacagttcaatt
agcaatttgataaagacacaaaaggcttcggtttccctcttcttttcatttgagtacatg
atactagcgacaacgacggtgtcaacatttgtgaaatatgttttctatgttagtgacatg
cttatggagggacaatgggagaggaagcctgtctacacattttacttggaacttattcgg
gacttgctccacttatccatgtatctgtgcttctttcttgtgattttcatgtactatggg
gtgccattgcacttaatacgtgagctctatgaaacatttaggaactttaagattcgcgtt
gctgattacgttcgttatcgaaagctcacttcgaacatgaatgatcgattcccagatgct
acgcctgaagagcttaatgcaagtgacgcaacttgcatcatttgccgtgaagagatgaca
acagccaagaaactattatgtggacacctttttcatgtgccttgcctgcgatcatggcta
gagcgacagcatacctgtcctacttgcagagccctagttgtacctcctgaaaatggggca
ggtacagctggaggacataggggatcacggtccgatgctcatcaacaggggacaggcaca
acagctcaaggtggtggagttgctggtgataatctcagtcaacatgaagccagactccga
gctgctgctgctgctgcatcgatttatgagaagtctcatgtatatccatctgcaaacaga
ctagtatggtctcctggatatgtggcacttcctcaggttcaaagacaaatggccgacgcc
gcaaacactgaatctagtggagtatcgcactcacagcttgcaacccctggtggaccttca
aacttgtcctcccctcaatttccacattacatgtttgtcccatttgaggttcctgatgtg
gcctatgaggagaggttgggcggcgatccgaatataacagcttctcaactggaggcccag
aaaaaatttctccaacaccagattgagatcctgcagaatcaattccaaactttacagaag
ccaaaaccgaaggaaagcatggacacagggccatcagcatctttggatggcaaaggaaag
aatgtcgaatcttcgtcctcgtctgtttcagattgtggacgtcatgtggagcttgaagag
attgattcatag
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