Prunus mume (Japanese apricot): 103333864
Help
Entry
103333864 CDS
T03196
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
103333864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmum04121
]
103333864
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103333864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
DUF7885
LRR_4
F-box-like
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
103333864
NCBI-ProteinID:
XP_008234995
UniProt:
A0ABM0P6B8
LinkDB
All DBs
Position
LG6:427675..431660
Genome browser
AA seq
584 aa
AA seq
DB search
MLKMANSFPEEVLEHVFSFIQSDSDRNSISMVCKSWYEIERWCRRRIFIGNCYAVSPRMM
IRRFPDIRSIELKGKPHFADFNLVPEGWGGYVHPWIAAMADAYPWLEEIKLKRMVVTDET
LELIAKSFKNFKLLVLSSCEGFSTDGLAAIAANCRNLRELDLHESDVEDLSGHWLSHFPD
TYTSLVSLNIACLGSEFSFSSLERLVGRCPNLKSLRLNRTVPLDRLANLLHRAPQLVELG
TGACSAELRPDLFSNLAGSLSGCKELKSLSGFWDVVPAYLPAIYSICPGLTSLNLSYAII
PSPDLIKLVSQCPNLQRLWVLDYIEDVGLDALAVSCKDLRELRVFPSDPFVVEPNVSLTE
QGLISVSEGCPKLQSVLYFCRQMSNDALITIARNQPNFTCFRLCIIEPRTPDYLTLEPLD
VGFGAIVEHCKDLRRLSVSGLLTDRAFEYIGTHGKKLEMLSLAFAGDSDLGLHHVLSGCE
NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDER
GHPESRPESCPVEKLYIYRSIAGPRFDMPGFVWTMDEDSAVRVT
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaatggcgaactcgttcccagaggaggtgctagaacacgtgttctcgttcata
cagtcggactcggaccggaactcgatctcgatggtgtgcaagtcgtggtacgagatcgag
cgatggtgcaggaggagaatattcatcgggaactgctacgccgtgagccctaggatgatg
atcagacggttcccagacattagatccatcgagctcaaagggaagcctcacttcgccgac
tttaatctggtccctgaaggctggggtggctatgtccacccctggatcgccgccatggct
gatgcctacccttggcttgaggagatcaagctcaagaggatggttgtcaccgatgagacc
ctggagctgattgccaagtctttcaagaatttcaagctccttgtgctttcgtcttgcgag
ggcttcagcactgatggccttgccgccattgctgccaattgcaggaatctgcgggagctg
gacttgcatgagagcgatgtggaggacctgagtgggcattggctcagccattttcctgat
acgtacacatcacttgtttcccttaacattgcctgcttagggtctgagtttagtttctct
tctctggagcgcctggtgggtaggtgtcccaatctgaagagtctccggctcaatcgcact
gtgcctcttgacaggctagccaatctacttcaccgggcacctcagctggttgagttaggc
acaggggcctgctcggctgagttgcggcctgatctcttctcaaacctagcaggttcactc
tcgggatgcaaggaactcaagagcctatctgggttttgggatgtggtcccagcatatctt
ccagctatttattctatctgccctgggctgacatcactaaatttgagttatgccattatt
ccaagccccgatcttataaagcttgttagccaatgtccaaatctgcagcgcctttgggta
ttggattacattgaagatgttggccttgatgccctggcagtatcttgcaaagatctacga
gaattaagggtgtttccatcagatccgtttgtagtggaaccaaatgtgtcgttgacagag
cagggcctcatatctgtttctgagggctgtccaaagctccagtcagttctgtacttctgc
cggcaaatgtctaatgatgcactaatcaccattgcaaggaatcaacctaactttacatgt
tttcgtctttgtataattgagccccgaactccagactaccttacccttgagccacttgac
gtgggttttggggccattgttgagcactgcaaggatctccggcggttgtctgtctctggt
ctactaactgatcgtgcgtttgagtatattggaacacatggaaaaaagttggagatgctt
tctctagcctttgctggagatagtgacttggggcttcatcatgtattgtctgggtgtgag
aatctacggaaactggagattagggactgtccttttggtgataaggctcttttggccaat
gctgcaaagctggagacaatgcgatccctttggatgtcttcttgctcagtgagttatgga
gcatgtaagctgctaggtcagaagttgccgaggcttaatgttgaagttatagatgagagg
ggacacccggagtccaggccggagagctgtcctgttgagaagctctacatttataggtcc
atcgcggggccaaggtttgacatgcctggctttgtttggaccatggatgaagattctgca
gtgagggttacttga
DBGET
integrated database retrieval system
