Prunus mume (Japanese apricot): 103334037
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Entry
103334037 CDS
T03196
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103334037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103334037
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103334037
Spliceosome [BR:
pmum03041
]
Complex C
Other components
Step II factors
103334037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_19
AAA_22
ResIII
IBR_1
zf-RING_UBOX
HA2_N
zf-C3HC4
IBR_2
Helicase_RecD
AAA_30
ABC_tran
RsgA_GTPase
Herpes_ori_bp
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
103334037
NCBI-ProteinID:
XP_008235185
LinkDB
All DBs
Position
LG1:16671132..16677691
Genome browser
AA seq
1724 aa
AA seq
DB search
MRSSCGPYPRATFRQPQPPEIPHRYPPRQPNSLPDGCCRRPPPRPPSFIVVLLSDQRNHR
KADIDAVIAKCKFKPENVEFSPSNVIVVSLFYTQWAHALEAIVCLWESRLDRVHNLTPKL
NRFVSVPSDLEELQDRLRGLFTERIKKLIDGEAVKKCEAKRALLSKEFERVSKLLLRPSP
VWTLDDLAQKKRRSKCEMELVESKIGEFKSAMNCLLAYLDGNGLEECGEEGVQVFKFSSE
VYDWGRIQSIMARECHRLEEGLPIYAYRQQILQQILTQQVLVLIGETGSGKSTQLVQFLA
DSGIAAEQSIVCTQPRKIAATSLAERVTQESSGCYREKSIKFNPTFLSGQELNSKVIFMT
DHCLLQHYMNDMNMSGISCIIIDEAHERSLNTDLLLALIKGLLGRRPSLRLVIMSATADA
EVLSNYYYGCGIFYVVGRSFPVDVRYKPSFSEGTSSDATSYVSDVLRVATEVHKKEKEGT
ILAFLTSQMEVEWACQKFIAPGAIALPLHGKQTFEDQYNVFQNYPGRRKIIFSTNVAETS
LTIPGVKYVIDSGMAKESKFEPASGMNVLRVCRISRSSANQRSGRAGRTEPGICYRLYSK
NDFEAMPPCQEPEIRRVHLGVAVLKILALGIKNLKDFEFIDAPCSEAIDMAMRNLIQLGA
VKQTDDVFELTKDGRFLVKLGVEPRLGKLILGCYNHSLRREGLVLAAVMANSSSIFCRVG
NDEEKLRSDCLKVQFCHRDGDLFTLLSVYKTWDNLAQEKKNTWCWENSINAKTMRRCQEM
VKDLESCLKHELNMIIPSTWCWNPHESNDCDKYLKKVILSSLVENVAMFSGHDQLGYEVA
LSGQHVRLHPSCSLLVFGEKPSWVVFGELLSISNQYLVCVTSIDFNSLSTLSPPPLFDVS
KMESQKLQLKVLTGFGSTLLKRFCGKGNGYLLHLVSRVRSICKDERINIKVDYYQNEITL
FATLHDMDRVSSFVYDALECERKWMRNECLEKCLYHGSGVLPSIALFGAGAEIKHLELQK
RCLTVDVVHSKLDSMDDKELLSELEKYASGSICAIHKFTGTGQESVDKGKSARITFLSPD
VAQKAVELNESEFSGSILKVIPSQVGGDRKMLSFPAVRAKVYWPRRLSRGIAIVKCDVDD
VAYMVNDFFNLLVGGRIVRCETSKRSMDSVVISGLEKDLSEAEILDVLRTATSRRILDFF
LLRGDAVENPPCGACEDALLKEISTFMPKRYSHNSCSIQVFEPEQKNAFMRALITFDGRL
HLEAAKALEQLEGKVLPGFLSWQKMKCQQLFHSSLSCPAPVYPVIKKQLDSLLSSFFQLN
GVEWSLDRNANGSYRVKISANATKTVADLRRRVEELVKGKTIDHASLTPTILQLLFSRDG
IALMHSLERETGTYILFDRRNVSVQVFGSSDQVSVVQQKLVDSLLTLHENKLIEIRLQGS
ALPPELMKEVVNRFGADLHGLKEKVPGADFSLNVRRQVISIHGNKDLKQKVEDNIYEIAQ
MTGSSTERFNSEADCPICLCEIEDEYRLAVCGHLFCRLCLVEQCESAIKNQDSFPMCCAH
EGCRSLIVFSDLRYLLSSEKLEELFRASLGSFIASSGGIYRFCPSPDCSSVYQVAAPGTD
GEPFVCGACYAETCTRCHLEYHPYLSCEQYREFKEDPDSSLKEWCKGKEHVKSCPVCRYT
IEKIDGCNHIECRCGKHICWVCLASYGTSNECYDHLRSVHMAII
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgagatcgtcgtgcggaccataccctcgcgccactttccgccaacctcagccgccggaa
attccccaccggtaccctcccaggcaacccaattccctgccggacggctgctgtcgtcga
ccccctcccaggcccccgagtttcatcgtcgtgctcctctccgaccaacgtaaccaccgg
aaagccgacatcgacgccgtgatcgctaaatgcaagttcaaacccgaaaacgtcgagttc
tctccctctaatgtcatagtggtctccttgttctacacacaatgggcccacgcgctcgag
gccattgtttgtctttgggaatcgcggctcgaccgggttcataatctgacaccgaagttg
aaccggtttgtttctgtgccgtccgatctcgaggagctccaggaccggctcagaggcttg
ttcaccgaaagaattaagaaattgatcgacggggaagcagtgaagaagtgcgaggcgaag
cgggccctgttgtctaaggaatttgagcgagtttcgaagttacttctgaggccaagccct
gtttggactctggatgacttagctcagaagaagaggaggagtaaatgcgaaatggaattg
gtggagagtaagattggggagttcaagtcggcaatgaactgtttgcttgcttatcttgat
gggaacgggttggaggagtgtggtgaagaaggcgtgcaagtgtttaaattttcaagtgaa
gtttatgattggggtcgaattcagagcataatggctcgggagtgccacaggctcgaagaa
gggttgcccatttacgcttatcggcagcaaattcttcagcaaattcttacccagcaggtc
ctggtgttaattggagaaactggttcaggaaagagtacacagttggtgcagtttcttgct
gattctggaattgctgctgagcagtctattgtatgcactcagcctcgcaagattgctgcc
acgtcgttggccgaaagggttacacaagaaagtagtgggtgttatagagaaaaatcaata
aaatttaatccgacatttttgtcagggcaggagttgaattctaaggtaatatttatgacg
gaccactgtctactgcagcactacatgaatgatatgaatatgtctgggatttcttgcatc
ataattgatgaggctcatgaaaggagcttgaatactgatctccttttggcattgatcaaa
ggtttactaggtcgaagacctagtttacgacttgttataatgtctgcaacagctgatgca
gaagtgctctcaaattattattatggctgtggaatcttttatgtggtggggaggagcttt
cccgttgatgttagatataaaccgtctttcagtgaaggaacttctagtgatgctacttcc
tatgtttctgatgtgctgagggtagcaacggaggtacacaaaaaagagaaagaagggaca
attcttgcctttttgacttcccagatggaagtagaatgggcttgtcagaagtttatagca
cctggtgcaattgcactgccactgcatggaaaacaaacttttgaagaccaatataatgtt
ttccaaaactaccctggaagaagaaaaattatattttccacaaatgtggctgagacatct
ctgacaattcctggggtaaagtatgtgattgattctggtatggctaaagaaagcaaattt
gaacctgcaagtggcatgaatgttctaagagtttgcagaatcagccggagttctgctaat
caaagaagtggccgtgctggaagaacggaacctggtatatgttacagactctactcaaaa
aatgattttgaggcgatgcctccttgccaggaacctgagatccgtagagttcaccttggt
gttgcagttctgaagattttggctttgggcatcaagaatttaaaagattttgaatttatt
gatgcaccttgttctgaagctattgacatggccatgcggaaccttattcagttaggagct
gtgaagcaaactgatgatgtttttgaattaaccaaggatggtcggttcttggttaaattg
ggtgttgagcctcggcttggtaaattaatccttggttgttataaccacagcttacgtagg
gaaggccttgttcttgcagctgtaatggcaaattccagtagtatattttgtagagttggt
aatgatgaagaaaaacttagatcagactgccttaaggtgcaattttgccatcgtgatggg
gatctttttacccttctctctgtgtacaagacatgggataatttggctcaagagaagaaa
aacacatggtgttgggaaaacagcattaatgccaaaactatgaggagatgccaagaaatg
gtaaaggatttggagtcttgccttaaacatgaactcaatatgataattcctagtacctgg
tgttggaatccacatgaatcaaatgattgtgataaatatttgaaaaaggttatactttct
tcccttgtggaaaatgttgctatgttctcgggacatgatcaacttggttatgaagtggca
ttaagcgggcaacatgttcggttgcatccttcgtgttcattgttagtatttggtgagaaa
cctagttgggtagtatttggtgaactcctgtcaatttctaatcaatatttagtctgcgtc
acttccattgatttcaactctttgtctaccctatctcctcctcctttgtttgatgtatct
aagatggaaagtcaaaaattgcaactgaaagttttgactggttttggcagtactctgctt
aaaagattttgtgggaagggcaacggttatctgcttcatcttgtttcacgtgttaggtca
atttgcaaggacgaacgtatcaacattaaagtcgattattatcagaatgagattacgttg
tttgccaccttgcatgacatggatagggtttcaagctttgtatatgatgccttggagtgt
gaacgaaaatggatgcgaaatgaatgtttggagaaatgcttgtatcatggttctggtgtc
ttgccttcaatagcattgtttggagctggtgctgagatcaagcatctggagcttcaaaaa
aggtgtttgactgttgatgtagttcattcaaaactagattctatggatgataaggagtta
cttagtgagcttgaaaagtatgcctctggtagtatatgtgctattcataagttcactggc
actgggcaggaaagtgttgataaaggaaagtcggccaggataacatttttaagtcctgat
gtggctcaaaaagctgttgaactaaatgaatctgaatttagtggctccatactgaaggtt
attccttctcaggttgggggtgatcgtaaaatgttgtcgttccctgctgttagagctaaa
gtttattggcctcgcaggctaagcagggggattgcaattgtcaaatgtgatgtggatgat
gttgcttacatggttaatgatttttttaaccttttagtaggaggaagaattgttcgttgt
gaaactagcaaaagatccatggattctgttgtgatcagtggacttgaaaaagatctttct
gaggctgaaattttggatgtgttgaggactgctacaagtaggagaatcctggattttttt
ctgctgagaggagatgctgtagaaaatccaccatgtggtgcttgtgaagatgctctccta
aaagaaatatcaacctttatgcctaaaagatactcccacaatagctgcagcattcaggtt
ttcgagcctgaacaaaagaatgctttcatgagagctttgattacatttgatggaagatta
cacttggaggcggcaaaagctttggaacaattagaagggaaagtattgcctgggttcctt
tcatggcaaaagatgaagtgccagcagttatttcatagctctctatcctgccctgcccct
gtttatcctgtgatcaagaagcagttggattcgttactttcaagtttttttcaactaaat
ggtgtagaatggagtttagataggaatgctaatggctcctacagagtgaagatatctgcc
aatgctacaaaaacagttgcagacctgagaagacgtgtggaggagcttgtgaaagggaag
acaatagaccatgccagcctcactccaactattttacagcttctgttctccagagatggc
atcgctctaatgcactcactagagagagagacgggaacctatattctttttgacaggcgt
aacgtcagtgtacaggtcttcggttcttcagaccaagttagtgtggtccagcagaaattg
gttgactcccttttaacgctccatgaaaataagctgattgagatccgacttcaaggtagt
gccttacctcctgagttgatgaaagaggttgttaacaggtttggggcagacctccatggg
ctcaaagagaaggtaccaggggctgattttagtctaaatgttcgccgtcaagtcatttcc
attcatggaaacaaggatttgaagcagaaagtagaagataatatttatgagattgcacag
atgacaggtagttcaactgagaggtttaatagtgaagctgattgccccatatgtttgtgt
gagattgaagatgaataccggcttgcggtgtgtgggcatttattttgtcgtttgtgtttg
gtggagcagtgcgagtctgcaataaaaaaccaagatagtttcccaatgtgctgtgcacac
gagggttgcaggtctcttattgtgttcagtgatctgagatatctcttatcaagtgagaag
ctggaggagctctttagggcctcattgggatcatttattgcttcaagtgggggaatctac
aggttttgcccttctcctgactgctcgtctgtgtatcaggtagctgctcctgggacagat
ggtgaaccattcgtatgtggtgcatgttatgctgagacatgtacccggtgccatttagaa
tatcatccatacttgtcgtgtgagcagtaccgggagttcaaggaagatccagattcatca
ttgaaggagtggtgcaaaggaaaagaacatgtgaagagctgcccggtatgcaggtataca
attgagaagatagatgggtgcaaccatatagaatgtaggtgtgggaagcatatttgctgg
gtgtgcttggcgtcttacggaaccagcaatgaatgctatgaccatttgaggagtgttcac
atggccatcatttga
DBGET
integrated database retrieval system
