Prunus mume (Japanese apricot): 103334338
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Entry
103334338 CDS
T03196
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103334338
09123 Folding, sorting and degradation
03018 RNA degradation
103334338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103334338
03041 Spliceosome [BR:
pmum03041
]
103334338
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103334338
mRNA degradation factors
5'-3' decay
Lsm complex
103334338
Spliceosome [BR:
pmum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103334338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
103334338
NCBI-ProteinID:
XP_008235513
UniProt:
A0ABM0P7N3
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All DBs
Position
LG6:2665000..2667067
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AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEGR
RITKLDQILLNGNNIAILVPGGSPEPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatccctcacagctactcccatcagagttgatcgaccggtgcatagggtcg
aagatatgggtgataatgaagggagacaaggagctcgtcgggactctgaggggatttgat
gtctacgtcaacatggttctagaagacgtcactgaatatgagattactcctgaaggaaga
cgtataaccaagcttgatcagatattgctcaacggaaacaacattgccattctggtccct
ggcggctcacctgaaccggaatga
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