Prunus mume (Japanese apricot): 103334358
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Entry
103334358 CDS
T03196
Name
(RefSeq) CLIP-associated protein isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmum03036
]
103334358
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pmum04812
]
103334358
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
103334358
Cytoskeleton proteins [BR:
pmum04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
103334358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT_EF3_N
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
HEAT_2
TOR1L1_N
Vac14_Fab1_bd
Cnd1
Adaptin_N
INTS1_R4
TPR_TTI1_C
HEAT_DAAF5
HEAT_Maestro
MMS19_C
UTP20
MMS19_N
Dopey_N
SEN1_N
Motif
Other DBs
NCBI-GeneID:
103334358
NCBI-ProteinID:
XP_008235537
LinkDB
All DBs
Position
LG6:complement(2967217..2977164)
Genome browser
AA seq
1444 aa
AA seq
DB search
MEEALELARAKDTKERMAGVERLHQLLEASRKSLSSSEVTSLVDCCMDLLKDNNFRVSQG
ALQALASAAVLSGDHLKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSSPTIIVE
RAGSYAWAHKSWRVREEFARTVTAAIGLFAATELPLQRAILPPILQMLNDSNPGVREAAI
LCIEEMYTQAGPQFRDELQRHHLPMSMVKDINARLERIEPKVRSSDGLTSNFSAVETKHV
SHNPKKSSPKAKSSSREVSLFGGENDATEKSVDPIKVYSEKELIREIEKIASTLVPEKDW
SVRIAAMQRIEGLVYGGATDYQCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKE
LLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRN
AVLRARCCDYALLILEYWADAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFSKT
WPERSRRLFSLFDPVIQRLINEEDGGIHRRHASPSVRDRGVSITPQPSAASNLPGYGTSA
IVAMDKSSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVSAIESMLRGLDLS
EKHNSTLRSSSLDLGVDPPSSRDPPFPAAVPASNHLSNSLMADSTTSSINKGSNRNGGLV
LSDIITQIQASKDSGKSSYRSNLSAEAMPTVSSYTMKRASERGQERGFIEENNDIREARR
FTNSQIDRQYDSPHRDGNFRDSHNNYIPNFQRPLLRKNVTGRMSAGRRRSFDDSQLSLGE
MSNYVEGPTSLNDALSEGLSPSSDWNARVAAFNYLRSLLQQGPKGIQEVIQNFEKVMKLF
FQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL
DIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHSINTEGSGNSGILKLWL
SKLTPLVHDKNTKLKEAAITCIISVYSHFDSISVLNFILSLSVEEQNSLRRALKQYTPRI
EVDLMNFLQNKKERQRLKSSYDPSDVVGTSSEEGYVSVSKKSHFFGRYSAGSVDSDGGRK
WSSTQESAIVTGNAGQTASDEARENLYQNFETGSNNDVLNSKSKDLSYTINPVSQNLGSW
TSPLDNIDGRVNLEGLSATPCMDVNGLMSMDHIGVGESIGHDSEAPTDLDPNHEKLKALK
VNSTPDTGPSIPQILHLIGNGTEESPTASKRDALQQLIEASIANEHSVWTKYFNQILTVV
LEVLDDFDSSIRELSLSLIIEMLKNQKDAMEDSVEIVIEKLLHVTKDAVPKVSNESEHCL
SIVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQDELMARLPSFLPALFE
AFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNITQLRLVTIYANRISQARTGSPID
TNHD
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagctctggagctcgcacgtgccaaggacacgaaggagcgcatggcgggagtg
gagcgcctgcatcagcttctggaagcgtcgagaaagagcctgagttcgtcggaggtgacg
tcgcttgtcgactgctgcatggatcttctcaaggacaataatttcagagtctctcagggc
gctctgcaagccctagcctccgctgctgtgctttccggcgaccacctcaagctccacttt
aatgcgcttgttcccgccgtcgtcgagcgtttgggcgatggaaaacagcctgttcgcgac
gccgctcggagactcctgcttactctcatggaggtttcttctccaacaatcattgttgaa
agagcaggatcttatgcctgggcacacaaaagctggagagttcgagaagagtttgcacga
actgtcaccgcagcaattggactttttgcagcaactgaacttccacttcagagggctata
cttcctcctattctacagatgttgaatgattcaaatcctggtgtaagggaagcagctata
ttgtgcattgaggagatgtatacacaggcagggcctcaattccgtgatgaacttcagcgg
caccatcttcctatgtctatggtgaaggatattaatgcgaggttagagaggattgaacct
aaggttcgttcctcagatggacttaccagcaattttagtgctgtagaaacaaagcatgtg
agccataaccccaagaaaagtagtccaaaggccaagagttcctcaagggaggtgtctctt
tttggaggggaaaatgatgctactgaaaaatccgtagaccctattaaagtttattcagag
aaggaactaataagggaaattgagaaaattgcttctacccttgtacctgaaaaagattgg
tcagtacgcattgctgcgatgcagagaattgaagggcttgtatatggaggtgctactgac
tatcagtgtttccggggactcttgaagcaacttgttggccctctgagcacacaattatcc
gatcgaaggtctagcatagtaaagcaggcgtgccatctgttgtgctttttgtcgaaggag
cttttgggagattttgaggcatgcgcggagatgttcattccagttcttttcaagctggtt
gtgattactgtacttgtaattgcagagtcggcagataactgcataaaaacgatgttgcgt
aattgtaaagttgctcgtgtgcttcctcgaattgctgattgtgcaaagaatgaccgtaat
gcagtacttcgtgcaaggtgttgtgattatgcactgttgatactagagtattgggctgat
gcaccagaaatacaacgatcggcggatttgtatgaagatctaataaggtgttgtgtggca
gatgcaatgagcgaggtccgatcgactgcaagaatgtgctatagaatgttctcaaaaaca
tggccagagcgttcccgacgattattttcactatttgatcctgttatccaaaggttaatc
aatgaagaggacgggggaatacataggcgtcatgcttctccttctgttcgtgataggggt
gtgtctattactccccagccatctgctgcttcaaacttacctggatatggaacttctgct
attgttgcaatggataaaagttcaagtttatcctcaggcacttctctatcttcaggacta
cttttgtcacaagctaaatcacttggtaaaggtactgaacgtagtctggaaagtgtgttg
catgcaagcaaacagaaggtcagtgcaattgaaagcatgcttagaggtttggatttgtct
gagaaacataattcaactctccggtcatcaagtctggatctaggagttgaccctccatca
tctcgtgatccaccattccctgctgctgtcccagcttctaatcatctttcaaactcttta
atggcagattcaactacctcaagtatcaataaaggtagtaaccgcaatggtgggttggtt
ttgtctgatatcattacacaaattcaagcttccaaagattctggtaaatcgtcatatcgc
agcaatctatcagctgaagctatgccgactgtctcatcatacacaatgaagagagcttct
gagagaggccaagaaaggggtttcattgaagagaacaatgacattagggaggctaggcga
tttactaactctcaaattgataggcagtatgactcacctcacagagatggaaactttagg
gactcacataacaattacatccccaattttcaaaggccgctcttaagaaagaatgtgact
ggaaggatgtctgcaggcaggaggagaagttttgatgatagccagctctcacttggggaa
atgtccaattatgtagaaggtcccacatctctaaatgatgcactgagtgagggactgagt
ccatcttctgactggaatgctagggttgccgcgttcaattatctccggtctttgctgcag
caaggcccaaaaggtattcaagaagtgattcagaattttgagaaagtgatgaagttgttt
ttccaacacttggatgatccccaccataaagttgcacaagcagctctttcaacacttgca
gatattattccatcttgtcgtaagccgttcgaaagttacatggaaaggatcttaccccat
gttttctctcggttaattgacccaaaggagttagttaggcagccttgctcaacaactttg
gatattgttagcaaaacttacagtgtagattccctcttgcctgctttgctccgttcacta
gatgaacagcggtcaccaaaggccaaattagctgttattgaatttgctatcagttccttt
aacaagcattcaatcaatactgaaggttctggtaacagtggcatccttaaattatggctt
tctaagttgacaccattggtccatgataaaaatactaaactaaaggaggcagccattaca
tgcataatatctgtctactcccactttgattcaatatcagtcttgaattttattcttagt
ttgtcagttgaagaacaaaattctttgagaagagccttgaaacagtatactcctcgcatt
gaagtggaccttatgaactttttgcaaaacaagaaagagcgacagcgcctaaagtcttct
tatgatccatctgatgtagttggaacatcttctgaagaaggatatgttagtgtctcaaag
aagagtcacttctttgggaggtactctgctggttctgttgacagtgatggtggcaggaag
tggagttcaacccaagaatcagccatcgtcaccggcaatgctggccaaacagcttctgat
gaagctcgggagaacttgtatcagaattttgagactggttccaacaatgatgttctcaat
tcaaaatcgaaggatctgtcttacacaatcaatcccgtgagtcagaacttgggatcctgg
actagcccactggataatattgatggtagagtaaatttggaaggcttgtctgctactcct
tgcatggacgttaatggtcttatgagcatggaccatataggggttggtgaaagcattggg
catgatagtgaagctcccactgacttggaccctaatcatgaaaaacttaaagctttgaaa
gttaattctacaccagacacgggtcccagtatccctcagatacttcacctgattggcaat
ggaactgaggaaagtcctacagcaagtaaacgtgatgcacttcaacagttaattgaagct
tccatagctaatgagcactctgtttggaccaagtattttaatcagattttgacagttgta
cttgaggtattggatgattttgattcctcaattcgggaactctctctttcattgatcatt
gaaatgcttaagaaccagaaagatgccatggaagattctgttgagattgtaattgagaag
ctgcttcatgttacgaaggatgcagttcccaaagtttcaaatgaatcggagcactgcttg
agtattgttttgtcccagtatgatccattcagatgtttaagtgttattgtccctttattg
gtaactgaagatgagaaaactcttgttacctgtattaactgtttgacaaagcttgtaggc
cggctttcacaagatgaactaatggctcgattaccatcatttttgcctgcactttttgaa
gcgttcggaaaccagagtgctgatgttcgcaagactgtcgtcttctgtttagtcgatata
tatatcatgcttggaaaagcattcttgccatacctggaggggctcaacatcacacagtta
cggttggtgactatatatgcgaatcgaatttcgcaggcgaggacaggctcgccgatagac
actaaccacgattag
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