Prunus mume (Japanese apricot): 103334413
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Entry
103334413 CDS
T03196
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103334413
Spliceosome [BR:
pmum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
103334413
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_7
NRDE-2
TPR_12
Motif
Other DBs
NCBI-GeneID:
103334413
NCBI-ProteinID:
XP_008235597
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All DBs
Position
LG6:complement(3355994..3363900)
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AA seq
828 aa
AA seq
DB search
MGDSETVVAQTSAVMGYTSAGYTTTGYTDANSNIAPDTGALHSKETTEFSTSAAPADAYS
ADPNSLIQQSDSYTTYETKPSVGVTDAGGNVTGNENDAMESSHAASYDSSVNGVAASGTG
TVSSVDNGDATDNVAGSVNVQQFGDGSAMSAEEDRLWNIVRADSLDFNAWTALIEETEKV
AEDNILKIQKVYDAFLAEFPLCYGYWKKYADHEARLGSMDKVVEVFERAVQGVTYSVDIW
LHYCIFSISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWGRLAMIYSR
ILENPNQQLDRYFNSFKELAGSRPLSELRTAEEAAAAAGAHSEGGDQVNGEEVGSDVAEQ
SPKPVSGGLTEAEELEKYITIREEMYKKAKEFDSKIISFETAIRRPYFHVRPLNVAELEN
WNNYLDFIEREGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAVGSLDIANNALARATQ
VFVKRKPEIHLFAGRFKEQSGDIPGAQAAYQLVHSEISPGLLEAIVKHANMEHRLGNVEA
AYSLYEQAIAIEKGKEHSQTLPMLFAQYSRFTYLVSLNAEKAREIVVEALEHVQLSKPLL
EALIHFESIQPLPKKIDYLDSLVVKFIEPSSENPNFASVTDREELSSIYLEFINLFGDAQ
SIKKAEDRHAKLFLPHRSSMSEKKRQAEDFLSSDKVKMAKSYSGVPSPAQSIMGAYPSAQ
SQWPAGYGVQPQAWPPATQATQGQQWTPGYTQQPYNAYGGYGSGYANPQMPATTPQTAAY
GAYPSTYPAQQAFPPQSYAQPTVAVAAAATAPAPQPAAVPQAYYGTYY
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgggggatagtgagacagttgttgctcaaacatctgcagtgatgggatatacatcagca
ggatataccacgacgggctacactgatgccaactcaaatattgctcctgatactggtgcc
ttgcattctaaggagaccacagagttttctacttctgctgctccggcagatgcatattct
gcggatcccaattctctcattcaacaatcagatagttacacgacatacgagactaaacca
tctgttggagtgacagatgctggtgggaatgttactggtaatgaaaatgatgccatggag
tcatctcatgctgctagttatgattcttctgtgaatggtgttgctgcttccggaacagga
actgtttcatctgttgataatggagatgctacagataatgtggccggatctgttaatgtt
caacaatttggagatggttctgctatgtctgctgaagaagatagactctggaacattgtg
agagctgattccttggattttaatgcctggactgctttaattgaagagacagagaaagtt
gcagaggataacatactgaaaattcaaaaagtttatgatgcgtttttagcagagtttcct
ttgtgttatggttattggaaaaagtatgcggatcatgaggcacgtctaggttctatggat
aaagttgtggaggtttttgaacgagcagttcaaggtgttacctattcagttgacatctgg
ttgcattactgcatattttccataagcacatatggagatccagacactgttagaaggctt
tttgagcgaggattagcttatgttggaacagattacctgtcttttcctctttgggataag
tacatagaatatgagtacatgcagcaggagtggggccgccttgccatgatctattcacga
atattagagaatccaaatcaacaactggatcggtatttcaacagctttaaggagttagcg
ggaagtcggccactctcagaattgaggactgctgaagaagctgcagctgcagcaggtgca
cattcggagggtggtgaccaagtaaatggtgaagaggttggatctgatgttgcagaacag
tctcctaaacctgtaagtggtggcttaacagaggcagaggagttggagaagtatatcacc
attagagaagagatgtataagaaagctaaagagttcgattctaagatcattagttttgaa
acagctattaggaggccgtactttcatgtgcggcccctcaatgttgcagagcttgaaaat
tggaacaactacctagactttatagaaagggaaggtgactttaacaaggtggtcaagtta
tatgaaagatgcctaattgcttgcgctaattatcctgaatactggattagatatgttctt
tgtatggaagccgttggaagtttggatattgccaataatgctcttgctcgtgcaacccag
gtctttgtgaagagaaaaccagagattcacctttttgctggtcggttcaaagagcagagt
ggggatatacctggtgctcaggctgcctatcaacttgtacattctgaaatttcacccggg
cttcttgaagcaatcgttaagcatgcaaacatggaacaccgcttgggaaatgtggaagct
gcctactctttatacgaacaggccattgccattgaaaaaggaaaagagcattcacagaca
ttacccatgttgtttgctcagtactctcggttcacatacctggtatctttgaatgctgaa
aaagctagagaaattgtagttgaagcgcttgagcatgtacagttatcaaaaccactactt
gaggctctgatacattttgagtcaattcagccattgccaaagaaaattgattatttagat
tcgttggttgtgaagttcatagagcccagctcagaaaaccccaatttcgcgagtgttacc
gacagagaagagctatctagtatctatttggagtttattaatctctttggagatgcacag
tctataaagaaggccgaggatcgccatgccaagctcttcttacctcataggagcagcatg
tcagagaaaaaacgtcaagctgaggactttttatcttccgacaaagtaaagatggcaaag
tcttactctggcgttccttcgcctgcccagtctatcatgggagcatacccaagtgcacaa
agccagtggccagctggttatggtgtacagccgcaagcttggccaccagctacgcaagct
acacagggacaacagtggacccctggttatactcaacagccatacaatgcatatggtggt
tatggaagtggctatgccaatccacaaatgcccgcaacgacgccacaaactgctgcttat
ggtgcttatccctctacatatcctgctcagcaggccttccctccacaaagttacgcacag
ccaaccgtggcagtagcagcggcagctacagcaccagctccgcaacctgctgcagtgcct
caggcgtattatgggacttactactga
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integrated database retrieval system
