Prunus mume (Japanese apricot): 103334430
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Entry
103334430 CDS
T03196
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103334430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103334430
04121 Ubiquitin system [BR:
pmum04121
]
103334430
03036 Chromosome and associated proteins [BR:
pmum03036
]
103334430
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103334430
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103334430
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
103334430
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
103334430
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
103334430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_6
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
Prok-RING_4
zf-RING_5
zf-C3HC4_4
PTCB-BRCT
PHD_NSD
zf-RING_10
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
103334430
NCBI-ProteinID:
XP_008235619
UniProt:
A0ABM0P7Y1
LinkDB
All DBs
Position
LG6:complement(3539436..3544094)
Genome browser
AA seq
678 aa
AA seq
DB search
MADSKCSDSSTRSMMNPWVLHFQKLGLELKCSLCLSLLHRPTLLPCNHIFCNSCIPNFTH
FGKECPLCKVQVADRDLRPAPFMENIVAIYKSLDASFCANLLQPISSDVRTVSPNISFAG
KMAKESFDNGQGGNSNSGQSIYSSGANERVWVPCSLNRSVADVVDTNCKVDKCVMPIDGF
NGVGNPNSPPSSQIRAGGLEECMTIERDMNQVAQSLPDSPPSFGDTKCSDNDSSDRHREQ
ISESSLVRKSISEIDDSRTGLKRHDSSATENDGHLRDLKRQKNLNFEPVSTTNSELEHGF
RTSSNTICAFCQSSTISEVTGPILHYANEKLVVGDEAAVSNAIPVHRICIDWAPQVYFVG
EAVKKLKAEVARGAKLKCSKCGLKGAALGCFVKSCRRSYHVTCAIGISKCRWDRENFLLL
CPAHCSVKFPSEKSNSENPKICPLSNSWVASNGAKEWILCPSGLSSEEKLLLIKFAKMNG
GTVSKIWRPDVTHVIAAVDEDGAYVRTLKTCMAILAGRWILKIDWVKACMEAMHHVDEEP
YEVSLDNYGCHDGPKTGRLRASNKDPKLFNGLSFYFAGDFVLDRQEDLEDLIIAAGGTVF
DSTEEALERSSLGQAASRTLVVYNLDPQEGCKLGEEVSILWQRSNEAQDIAAKIGSQIVG
HTWLLESIARCELQPLVC
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctaagtgtagtgacagttctaccaggtcgatgatgaatccgtgggttctt
cattttcagaaactgggtctcgagctcaagtgttcgctctgcttgagtttgcttcatcgg
ccaacattgcttccatgcaatcacattttctgcaattcctgcatacccaattttacgcat
tttggaaaagagtgccctttgtgtaaagttcaagttgcggatcgagatctcaggcctgcg
cctttcatggaaaacatagtagcaatctacaaaagcttggatgcgtctttctgtgccaac
ttgttgcagcccatttcttctgatgttaggacagtttcgcctaatatcagttttgctggg
aaaatggctaaagaatcatttgacaatggccaagggggtaattcaaacagtgggcaatcc
atctattcatcaggtgctaatgaacgagtttgggttccatgtagtctgaatcgttctgtt
gcagatgtagttgacacgaattgcaaagtagataagtgtgtcatgccaatagatggattt
aatggagtgggaaatcccaattcgcctccaagctctcaaataagagctgggggacttgaa
gaatgtatgaccatagaaagagacatgaatcaggtagcgcagtcattgccagacagtcct
ccttcatttggtgataccaaatgttcagataatgatagctctgatcgtcaccgtgagcaa
atttcagaaagttctttggtcaggaaatctatcagtgaaattgatgatagtagaacaggt
ctgaagaggcatgatagttctgcaactgaaaatgatggtcatttgagggacctcaaaaga
caaaagaatctgaactttgagccagtttcaactactaattctgagctggaacatggattc
aggacatcttctaataccatttgtgcattttgccagtcttccacaatctcagaggttaca
gggccaatcctgcattatgctaatgagaaattggtagtgggagatgaggcagctgtttca
aatgccatacctgttcacagaatatgcattgattgggcaccacaagtgtattttgttggt
gaagctgttaagaagttgaaagcggaagtggcaaggggtgcaaagcttaaatgcagcaaa
tgtgggctaaagggagcagcattgggatgctttgtgaagtcatgccggagaagctatcat
gttacctgtgcaattggaatttctaaatgtcgttgggacagggaaaactttctgctgctc
tgtccagctcattgttctgttaaatttcccagtgagaagtcaaattctgagaatcccaaa
atatgtccactgtccaacagttgggtagcttcaaatggagcaaaagaatggattttatgc
ccttctggtttgtcttctgaagagaagcttcttttgatcaagtttgccaagatgaatggt
ggaactgtgtccaagatctggagaccagatgttacacatgtaattgcagccgtggatgag
gatggtgcatatgtccggactttaaaaacctgcatggccattttggctggaagatggatt
ctgaaaattgactgggtaaaagcatgcatggaagccatgcatcatgtagatgaagaacct
tatgaagttagtctcgataactatgggtgtcatgatggcccaaaaactggcaggcttcgg
gcatcaaacaaggatccaaagctcttcaatggtttgagtttctattttgctggtgatttt
gtattggatagacaggaagatcttgaagatttgatcatagccgcaggaggtaccgtcttt
gacagcacagaagaagcgctggaacgaagttctcttggacaggcagcttcaaggacgcta
gttgtttacaaccttgacccccaagaaggatgcaagttgggggaagaagtttcaatcctt
tggcaaaggtcaaatgaagcccaggatatagccgcaaaaattggatcccaaatcgttggc
cacacctggctcttggaatcaattgctagatgtgagttacagcctcttgtctgttga
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