Prunus mume (Japanese apricot): 103334448
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Entry
103334448 CDS
T03196
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103334448
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmum01009
]
103334448
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103334448
03036 Chromosome and associated proteins [BR:
pmum03036
]
103334448
Protein phosphatases and associated proteins [BR:
pmum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
103334448
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
103334448
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
103334448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
DUF4187
Motif
Other DBs
NCBI-GeneID:
103334448
NCBI-ProteinID:
XP_008235641
LinkDB
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Position
LG6:3675291..3681891
Genome browser
AA seq
540 aa
AA seq
DB search
MDIDAVVGDVGSFDPELLQLPELSPFALKASPQIAEDLYAQWLSLPQTGRLVKSLIDDAT
AGIPINALGNSSSANAAGSNSLPSMFQAGSTPPLSPRSSSGSPRFSKLKTSPSSLRSPLK
VVSEPVREAIPQFYFQNGRPPPKELQEHCLSRINDLFGGHMDGLQLHEFKLVTKELCKLP
TFFSSAIFKKIDTSCSGIVTRDAFVRYWVDGNMLTMDTATQIFKILKQSDSNYLTQVDFK
PILLELVATHPGLEFLHGTPEFQERYAETVIYRIFYYINRSGNGRLTLRELKRGNLIAAM
QHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRV
FSQIPRKFTSKVEGKMGYEDFVYFMLSEEDKSCEPSLEYWFKCIDLDGNGVLTPNELQFF
YEEQLHRMECMAQEPVLFEDILCQIVDMIAPEREDYLTLADLKGCKLSGNVFNILFNLNK
FIAFESRDPFLIRQEREDPTLTEWDRFAHREYIRLSMEEDGENASNGSVEVWDESLEAPF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggatatagacgcggttgtaggggatgttggttctttcgatcctgagcttttacagctc
ccggaattgtctccgtttgcgcttaaagctagtccccaaattgccgaggatttgtacgca
cagtggctttcgcttcctcaaaccggtcgattggtgaaatctctaattgacgatgcaacc
gcaggcattcccatcaatgcccttgggaactcttcaagtgcaaatgctgccgggagcaat
tcattaccttccatgtttcaggctggaagtacacccccactttcaccgagaagttcctct
ggttctcctcgcttttcaaagctgaaaactagtccttcttctctgcgatctccgctaaaa
gtggttagtgaaccagttcgagaagccattcctcagttctattttcaaaatggccgtcca
ccaccaaaggaacttcaggagcattgtctttctagaattaatgacctttttggtggtcat
atggatggattgcaacttcacgagtttaagttggttacgaaggagttatgcaagctacca
acatttttctcctctgctatctttaaaaagatagatactagctgcagcgggatagtgacc
agggatgcattcgtcagatattgggtcgatggcaatatgctgacaatggatacagcaact
caaatatttaaaattctaaagcagtctgatagcaattaccttactcaggtagacttcaaa
cccattcttctagagcttgtggcaacccatccagggttagaatttttacatggaactcct
gaatttcaagaaagatatgctgaaactgtaatatacagaatattttactacataaataga
tcaggaaacggtcgccttaccctcagggagctgaaacgaggaaatctaattgctgccatg
caacatgcagatgaggaagaggacattaacaaagttctgaggtacttctcttatgaacat
ttttatgttatatactgcaaattttgggagctggacacggaccatgatttcttgattgac
aaagagaacctcattagatatggtaaccatgcccttacctacaggattgttgatagagta
ttttcgcagattccgagaaagtttactagcaaggttgaagggaagatgggttatgaagat
tttgtttacttcatgctgtcagaggaggataagtcgtgtgagcctagccttgagtattgg
ttcaaatgtatagatttggatggaaatggagtccttacacccaatgagttgcagttcttt
tatgaggagcagctgcatcgtatggaatgcatggcccaagaacctgttctatttgaggat
attttgtgccaaatagttgacatgattgcaccagagagggaagattatctcacactagct
gacttgaaagggtgcaaactttcaggaaatgtcttcaatatccttttcaaccttaataag
tttatagcttttgaaagtcgtgatccatttcttattcgccaggaacgcgaggatccaact
ttgacagagtgggaccgctttgcacacagagaatatataaggctgtcaatggaagaagat
ggtgagaatgcctctaatggaagtgtagaagtatgggatgaatcactcgaggctcctttt
taa
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