KEGG   Prunus mume (Japanese apricot): 103334827
Entry
103334827         CDS       T03196                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI2
  KO
K10752  histone-binding protein RBBP4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03082  ATP-dependent chromatin remodeling
pmum03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103334827
   03083 Polycomb repressive complex
    103334827
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pmum03036]
    103334827
Chromosome and associated proteins [BR:pmum03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     103334827
  Histone modification proteins
   HAT complexes
    HATB complex
     103334827
   HDAC complexes
    Sin3A-HDAC complex
     103334827
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     103334827
    PRC2.2
     103334827
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     103334827
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103334827
  Chromatin remodeling factors
   NuRD complex
    103334827
   NuRF complex
    103334827
   NuRF complex (fruit fly)
    103334827
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I WD_LRWD1 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st WD40_RFWD3 MIOS_WD40 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_DCAF4 DUF6922
Other DBs
NCBI-GeneID: 103334827
NCBI-ProteinID: XP_008236022
UniProt: A0ABM0P8V1
LinkDB
Position
LG6:complement(5406356..5409153)
AA seq 405 aa
MAEDQDQDQDAALLEEEYAVWKKNTPFLYDLIISHPLEWPSLTVHWAPSAPQPHAETSFA
FHKLVLGTHTSDGYPNFLMVADALLPTSQPNFGAISEEDPEMPKVEITQKIPVDGEVNRA
RWMPQKPTIVGAKTSGAEVYVFDSAKHGLKPQEGGCDPDLRLRGHDKEGYGLSWSPFKEG
FLLSGSYDCKICLWDVSASPQDKVLDPIHVYERHESVVGDVSWHPKNENLFGSVGDDCQL
MIWDLRTNQTQHSVKAHEKEVNYLSFNPYNEWILATASSDTTIGLFDMRKLTVPLHVLSS
HTEEVFQVEWDPNHETVLASYADDRRLMVWDLNRIGDEQLEGDGDDGPPELLFSHGGHKA
KISDFSWNKYEPWVISSVAEDNTLQVWQIADSIYGDDYDVQASDV
NT seq 1218 nt   +upstreamnt  +downstreamnt
atggcggaggaccaggaccaggaccaagacgcggctctccttgaggaagagtacgccgtg
tggaagaagaacacccctttcctctacgacctcatcatctctcaccctctcgaatggcca
tctctcaccgtccattgggccccatcggctccacagccccacgccgaaacatctttcgcc
ttccacaagctcgtcctgggtacccacacctctgatggctaccccaacttcctcatggtg
gccgacgccctcctccccacatcccaacccaactttggcgccatttctgaagaagatccc
gagatgcctaaggtggaaataacgcagaagattcctgttgatggggaagtgaatagggca
cggtggatgccacagaaaccaactattgtgggtgcgaagaccagcggtgctgaggtgtat
gtgtttgattctgcgaaacatgggttgaagcctcaagagggtggttgtgatcctgatttg
aggttaaggggtcatgataaagaaggatatggcttgtcctggagcccttttaaggagggt
ttccttttgagtggttcttatgattgtaaaatttgtttatgggatgtgtctgcttcgcct
caagataaagtgctcgatccaatccatgtttatgagcgtcatgaaagtgtggttggagat
gtatcatggcatccaaagaacgagaacctatttgggtctgttggggatgattgtcagttg
atgatttgggacttacgcacaaaccaaacgcagcattctgtcaaagctcatgagaaagag
gtgaactatctttctttcaatccgtataatgaatggattctggcgacagcatcttcagac
actaccattggtctgtttgatatgcggaaactgactgtgccattgcatgttctgagtagc
cacacagaggaggtgttccaggttgaatgggatccgaatcatgaaactgtgttggcatct
tacgctgatgaccgaaggttgatggtttgggacctcaacaggattggggatgagcagttg
gagggagatggtgatgatggcccaccagaacttctcttctcacatggcggccataaagca
aagatatcagatttctcttggaacaaatatgagccatgggtcatttcaagtgtagctgaa
gacaacactcttcaagtttggcaaattgctgacagcatatatggggacgattatgatgtg
caagcttccgatgtttag

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