Prunus mume (Japanese apricot): 103335103
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Entry
103335103 CDS
T03196
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103335103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103335103
Spliceosome [BR:
pmum03041
]
Complex B
Other components
Prp19-related factors
103335103
Complex C
103335103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
103335103
NCBI-ProteinID:
XP_008236329
UniProt:
A0ABM0P9L5
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All DBs
Position
LG6:complement(7192283..7195012)
Genome browser
AA seq
498 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAIGSNDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLDERIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQDSEGTAEARQQAVAHSGLLPRAVISQQQNQLQDQPAPVHFYNMPPPPSQERSFY
PSMDPQRMGAIVPSQEGAPSGPTGSGENNSGAERQQRSQHYAFQNVPQPHGQYRQQFYPP
PYGYVPPPTVPYQQYPPQYHARVPPPPSLPMNQQYQHSAIPGPAHSGSTSSGSAPSSSGP
SGCTPSGSGSAQTGSSQQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctcaggaatgtggaggcggatggttgggaacgttcagactttccc
atcatctgcgagtcatgcttgggcgacaatccctacgtccggatgacacgagctgattac
gacaaggagtgcaagatttgcactcgaccattcaccgttttcaggtggagacctggtcgt
gatgcgcgatttaagaagtcagagatttgtcagacgtgcagtaagttgaaaaatgtttgt
caagtttgcctcttggatctggaatacggcttgccagttcaggttcgagatactgctctg
gccatcggttctaacgatgccattccaaagagtgatgtaaatagggagtttttcgctgag
gagcatgaccgaaaggctagagctggtatagactacgaatcttcatacggaaaggcacga
cccagtgacactattctgaagcttcaaagaacaacaccctattacaaaaggaacagagca
catgtctgcagtttctacattcggggtgagtgcacaagaggtgctgagtgtccttacagg
cacgagatgcccataactggggagttgtcacagcaaaacatcaaagatcgttactatgga
gtcaatgatccagtggcaatgaagctgcttaacaaggctggagagatgccctccctggaa
cctcctgaggatgaaagcataagaactctatacgtgggtgggcttgatgagagaatttct
gagcaggatttgagggatcaattttatgctcatggtgaaatagaatctgttaggatggta
ctccaacgagcatgtgcttttgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaataaactggtaataaagggtttgagattgaagttaatgtggggtaga
ccccaagcaccaaaacaggactcagagggcacagctgaagctaggcagcaggcagtggct
catagtgggttgttgcctcgagcagtcatatctcaacagcagaaccaattacaagaccaa
cctgcaccagtgcacttttacaacatgccacctccaccctcacaggagagatcattttat
ccatcaatggatcctcaaagaatgggggctatagttccatcccaggaaggggctcctagt
gggcctacagggtcgggcgagaacaattccggtgcagaaaggcagcaacgtagtcagcat
tatgcttttcaaaacgtgcctcaaccacatggccaatatcgtcagcagttttatcctcct
ccctacgggtatgtgcctcctccaacagtaccgtaccagcaataccctccacaatatcat
gctcgagtgccgccgccaccatccttgccaatgaaccaacagtaccagcattcagcaata
ccagggcctgcacactcaggttctacatcatcaggatccgcaccatcaagttctggacca
tcggggtgcacgccatctggttctgggtctgcccagacggggtcatcccagcagtga
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integrated database retrieval system
