Prunus mume (Japanese apricot): 103335337
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Entry
103335337 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03020
RNA polymerase
pmum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103335337
09124 Replication and repair
03420 Nucleotide excision repair
103335337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103335337
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103335337
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103335337
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103335337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Enterotoxin_b
Motif
Other DBs
NCBI-GeneID:
103335337
NCBI-ProteinID:
XP_008236569
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All DBs
Position
LG6:complement(8604924..8607615)
Genome browser
AA seq
318 aa
AA seq
DB search
MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS
VLNDEFIAHRLGLIPLTSARAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
TSKDLLSSDHTVVPVDFSDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVTFMYEPDIXINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVVVVDPEAYTYD
DEVIKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEVLKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcaaatcgtaccagaggctaccacgggtcaaaatccgtgaaatgcgtgacgac
tacatgaagttcgagctccgcgacaccgacgccagcgtcgccaacgctctccggcgagtg
atgatcgccgaggtccccaccgtcgccatcgacctcgtcgagatcgagatcaactcgtcc
gtgcttaacgacgagttcatagcccacagactcggcctcatcccattgacatccgcccga
gccatgagcatgcgcttctcacgtgactgcgacgcctgcgacggcgacggccagtgcgag
ttctgctccgtcgagtttcatcttcgcgccaagtgccattccgaccaaaccctagacgtc
actagcaaggaccttctcagctctgaccacaccgtcgtccccgtcgatttctccgattcc
gccggcatggaatcttccgaacaaaaagggattatcattgtgaagttgcgaagggggcaa
gagctgaggctaagggccattgccagaaaagggattggcaaagatcatgccaagtggtca
cctgcagccactgtcactttcatgtatgaacccgatatttgaatcaatgaggagttgatg
gatatgttgactcttgatgagaagaaggcttgggttgaaagtagtcctaccaaagtcttt
gactttgatcctaaaaccgagaaggtcgtggtggttgatcctgaagcatacacctatgat
gatgaagtgatcaagaaagcagaagctatggggaagcctgggcttgtggatatcattgca
aaagaagatagttttattttcacagtggaatctactggtgcggtcaaagcttctcagttg
ttactcaatgccatcgaagtcctgaaacagaaactggatgcagtgcgcctttctgaggat
actgtagaagctgatgatcagtttggtgaattaggtgctcatatgcgaggaggatga
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