Prunus mume (Japanese apricot): 103335758
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Entry
103335758 CDS
T03196
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103335758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103335758
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
103335758
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
103335758
NCBI-ProteinID:
XP_008237010
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All DBs
Position
LG6:11563604..11570498
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AA seq
920 aa
AA seq
DB search
MESPLDLTPIKTSYDGLYSKGYKRMKVCFDTNDYDSMDFSPSNHDEAVHKKPKSTSEVVD
YSDPFAIPDLLERIDCGKYGSVTKDIEAILARKRQTLSPYFEKYPALSNLSLEEKRQGKR
APKSANQQASPLAQNNVIDLEDDSVENNAPAALLPVVIIDSDEEQSEHPRPPYPFKEVVL
PEPSYSFQEVFLGQPSEQLVVRDFVENKVPGETEIKNDPGVYVGVEDDDNHQTDTEEDDG
LGDIWNEMSMALESNKDVVVDPSSEGMSDGGEDCDCDHSFVLKDDLGYVCRICGVIDRGI
ETIFEFQFNKVKRSTRTYMPDSRNAKDREAAEISGVKFSEDGLIITEISAHPRHMKQMKP
HQVEGFNFLVSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPNARPLIVLPKGIL
DTWKKEFKIWQVEDIPLYDFYESKADNRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDRE
TSKISAMCQEILLKAPSILILDEGHTPRNDNTDVFQSLTKLQTPRKVVLSGTIFQNHVNE
VFNLLNLVRPKFLRSETSRPIIKRIMSRVHISGVRKQFKAGSESAFYELVEHTLQKDNDF
RRKVTVIHELREMTSKVLHYYRGDSLDELPGLVDFTVLLNLTPRQKHETEKLKKFARKFK
QSSVGSAVYLHPKLYSFSWKPTDPDDKVDELLDKMDVKDGVKARFFLNLLNLCESAGEKL
LVFSQYLLPLKFLERLVAKVKGWSPGREMFMISGESSSEQREWSMDQFNNSSTAKVFFGS
IKACGEGISLVGASRVILLDVHLNPSVSRQAIGRAFRPGQKKKVFVYRLVAASSPEEEDH
STCFQKELIAKMWFDWNEYCGYRDFGVETIDVNECGDLFLESPVFREDIKVLYKRFVLLY
IFLSSLSCNLQDLNLSVSMS
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaccacttgatctaacgcctattaaaacatcttacgatggtttgtattccaag
gggtataagaggatgaaagtatgttttgatacaaatgattatgatagcatggacttctct
ccaagtaaccatgatgaagctgtacataaaaagcctaagtctacttcagaagttgttgat
tacagtgatccatttgccataccagacttgctggagaggatagactgtggcaaatatgga
agtgttacaaaggacatagaggcaattcttgctcgaaagaggcaaactctgagcccttat
tttgaaaaatatcctgcactgtcaaatctatccttggaggagaaaaggcagggtaaaagg
gctcctaaatctgcaaatcaacaggctagtccattggcccaaaataatgtcattgatttg
gaggatgactctgttgaaaataatgctccagcagcattattgcctgttgtaattattgat
tcagatgaggaacaaagtgaacatccaagacctccttatcctttcaaagaggttgtcttg
ccagaaccatcctattctttccaggaggttttcttgggacaaccatctgaacagttagtg
gtaagggactttgttgagaacaaagttccaggagagaccgaaattaagaatgaccccgga
gtttatgttggtgtagaagatgatgacaatcaccagactgatactgaagaagatgatggg
ttgggagatatttggaatgaaatgtcaatggcattagaatctaacaaggatgttgttgtg
gacccttcatctgaagggatgagtgacggcggggaggactgtgactgtgatcattctttt
gtcttaaaggatgatcttggatatgtttgccgcatttgtggggttattgacagaggaatt
gagaccatatttgagtttcagtttaacaaggtcaaaaggagtacaagaacttacatgcct
gattctcggaatgccaaagacagagaggcagctgagataagtggagttaaattttcagag
gatggtttgataataactgaaatctctgcccacccaagacatatgaagcaaatgaaacct
catcaagtggagggtttcaattttcttgttagtaacttggtgggtgataatcctgggggt
tgcatcttggcccatgctccaggttctggtaaaacatttatgataattagtttcatgcaa
agttttctagccaagtatccaaatgctagaccgcttattgtgcttcctaaaggaatcttg
gatacatggaaaaaggagtttaaaatttggcaagtagaggatattccattatatgatttc
tatgaatccaaagcagacaatcgatcacagcagctggaggtgttgaaacagtgggtggag
cagaaaagtatccttttcttagggtacaagcagttctcctctattgtttgcgatcgagaa
actagcaagatatcagctatgtgccaggagatattgctaaaggcaccttcaattctgatt
ctggatgaggggcacactccaagaaatgataacactgatgtgttccaatcccttaccaaa
ttacagacacctaggaaagttgtactttctggaaccatttttcaaaatcatgtcaacgaa
gtattcaatcttttgaatcttgttcgtcctaaatttttaaggtcagaaacttcacgaccc
atcattaagcgcatcatgagtagagttcatatatcgggtgtaaggaagcagttcaaagct
ggtagtgaatcagctttctatgaactagtggaacataccctacagaaggataatgatttc
aggaggaaagtgactgtcatacatgagttgcgtgagatgactagtaaggtgcttcattat
tatagaggagattccctggatgaacttcctggacttgttgatttcactgtgctactaaat
ctcacccccaggcagaagcatgagactgagaaactgaagaagttcgcaaggaagttcaag
caaagttctgttgggagtgctgtttatctgcacccaaaattgtactccttctcttggaaa
cccactgatccagatgataaagtggatgagctcttggacaaaatggatgtgaaagatgga
gtcaaggcaagattcttccttaatctactgaacttatgtgagtcagctggtgagaaactt
ttggtgttcagtcagtacctcctaccattgaaatttttggagagattagtagccaaagtg
aagggttggagtcctgggagagaaatgtttatgatctcaggtgagtcaagctccgagcaa
cgggaatggtccatggatcaatttaacaattcctctactgctaaggtcttctttggctca
attaaggcatgtggagagggtatatctctggtaggggcatctcgagtcatacttttggat
gtccatcttaatccctcagtgagccggcaagcaattggccgtgcatttagaccaggtcaa
aagaagaaagtgtttgtgtatagattggtagctgctagttcccctgaagaggaagatcat
agcacttgcttccagaaagaactaattgccaaaatgtggtttgactggaatgagtattgt
ggttatcgggattttggagtggagaccattgatgtgaatgaatgtggtgatctcttcctc
gaaagtccagtgttcagggaagatataaaggttctttacaaaaggtttgtactcttgtac
atcttcttgtcatctttgagttgcaacttgcaagacctaaatctttctgttagcatgtcc
taa
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