KEGG   Prunus mume (Japanese apricot): 103336229
Entry
103336229         CDS       T03196                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03030  DNA replication
pmum03410  Base excision repair
pmum03420  Nucleotide excision repair
pmum03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103336229
   03410 Base excision repair
    103336229
   03420 Nucleotide excision repair
    103336229
   03430 Mismatch repair
    103336229
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmum03032]
    103336229
   03036 Chromosome and associated proteins [BR:pmum03036]
    103336229
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103336229
DNA replication proteins [BR:pmum03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103336229
  DNA Replication Termination Factors
   ELG1-RFC complex
    103336229
Chromosome and associated proteins [BR:pmum03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103336229
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103336229
  Check point factors
   HRAD17(Rad24)-RFC complex
    103336229
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase AAA_16 Rad17 Viral_helicase1 RCF1-5-like_lid RuvB_N AAA_24 AAA_11 AAA_5 nSTAND3 AAA_assoc_2 AAA_25 AAA_19 AAA_28 DNAX_ATPase_lid ABC_tran AAA_30 MeaB bpMoxR RNA_helicase IstB_IS21 AAA_18 AAA_3 KTI12 AAA_7 NTPase_1 DO-GTPase1 SRP54 SLFN-g3_helicase
Other DBs
NCBI-GeneID: 103336229
NCBI-ProteinID: XP_008237493
LinkDB
Position
LG6:18027260..18030599
AA seq 333 aa
MASSSSSSSSSAYDIPWVEKYRPSNVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTG
KTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
EADSMTSGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCALVRFSRLSDQEILGR
LMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATNSGFRFVNQENVFKVCDQPHPL
HVKNMVCNVLEGKFDDACSGLKQLYDLGYSPTDIITTFFRIIKNYDMAEYLKLEFMKETG
FAHMRICDGVGSYLQLCGLLAKLSLIREMAKAT
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcgtcatcttcttcttcttcttcgtcatcagcctacgacataccatgggtggagaag
tacaggcccagcaatgtcgccgacattgtgggcaacgaagacgccgtgtctaggctccag
gtcatcgctcgcgacggcaacatgcccaacctcatcttggccggtcctcctggaactggt
aagaccactagtatacttgctcttgcgcatgagctcttgggaccaaattataaggaggct
gttttagagctgaatgcatcagacgacaggggaatagatgttgtgaggaacaaaattaaa
atgtttgctcaaaagaaagtcacattgcctcccgggcggcataaagttgtcatcttggat
gaagctgacagtatgacatctggagcacaacaagctttgaggcggacaatggaaatatat
tcaaattccactcgttttgctcttgcttgcaatgtatcttccaaaattattgagcctatt
cagagtagatgtgcccttgtccgattttctagattatctgatcaggagatacttggtcgc
ctaatgatagtggttcaagctgaaaaggttccctatgttccagaaggtcttgaagccatt
attttcactgctgatggtgatatgaggcaggcactgaataacctgcaagctacaaacagt
ggattccggtttgtcaaccaagaaaatgttttcaaggtctgtgaccagcctcatccattg
cacgtaaagaatatggtgtgcaatgtgcttgaagggaaatttgatgatgcttgttcaggt
ctcaagcagctctatgatttgggctactccccaactgacataatcactacctttttccgt
atcataaagaattatgatatggctgagtatttgaaattggaattcatgaaggaaacaggt
tttgctcacatgagaatctgtgatggagttggctcctaccttcagctgtgtggtcttctg
gctaagctttccctaattcgtgagatggctaaagcgacataa

DBGET integrated database retrieval system