Prunus mume (Japanese apricot): 103336316
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Entry
103336316 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103336316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103336316
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103336316
Spliceosome [BR:
pmum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103336316
Complex C
U5 SnRNP specific factors
103336316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
DUF2608
Motif
Other DBs
NCBI-GeneID:
103336316
NCBI-ProteinID:
XP_008237580
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All DBs
Position
LG6:complement(18910514..18913229)
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AA seq
720 aa
AA seq
DB search
MKRLADSVPVAPSSSSLPPKKPVFLTKAQREQLALQRRQEETEDQKRRQSHVLSNLSHSR
PSSDAAPPTATANSDRDRDRDRDRDRDRDRDHRDRDRDRYSRDRDRERDSERRNRDRDRD
REREEEAKVRERARLDKLAERERDKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENT
EDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAVKYERELREEIRKKEGVEEKPE
EAMAQKLKEEAAELYDTFDMRVDRHWTDKKLEEMTERDWRIFREDFNISYKGSRIPRPMR
SWAESRLSEELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT
YISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHFLGIKVVSIVGGQSIEEQG
FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS
SNFKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQ
NVIMSKESEKFERLKRLLDELGDKTAIVFVNTKKNADYVAKSLDKNGYRVTTLHGGKSQE
QREISLDGFRAKKYNVLVATDVAGRGIDIPDVAYVINYDMPGNIEQYTHRIGRTGRAGKT
GVATTFLTMHDTEVFYDLKQMLIQSNSHVPPELAKHEASKFKPGSVPDRPPRRNDTIFTH
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcttagcagatagcgttcccgtagcaccctcctcctcctcgttgccgcccaaa
aaacccgttttcttgacgaaagcccaacgcgagcagttagccctccaacgccgtcaagaa
gaaaccgaagatcagaaacgccgtcaaagtcatgttctctccaatctctcccattcccgc
ccttcctccgacgccgcaccacccacagcaaccgccaattccgaccgagacagggaccgg
gaccgagacagagacagagatagagaccgggatcatagggaccgagacagggaccgatat
tcccgagacagagaccgggaacgagattcggagcggcgaaaccgcgaccgcgaccgtgat
agggagcgggaggaggaggccaaggttcgagagcgtgcccgcttggacaaattagcagag
cgcgagcgagacaaagagctggacgccattaaagagcagtatctcggatcgaagaagccg
aagaagcgggtcatcaagcccagcgagaagtttcggttctctttcgattgggagaacacg
gaggacacttctcgggatatgaatgctttatatcaaaaccctcacgaggcccagctcttg
tttgggcgagggtttcgggctgggatggaccggagggagcagaagaagctggctgtgaag
tacgagagggagctgagggaggagatccggaagaaggagggcgtggaggagaagcccgag
gaggccatggcgcagaagctcaaggaggaggctgcagaattatacgatactttcgacatg
agggtcgatcgccattggactgataagaagcttgaagagatgactgagagggattggagg
atttttcgggaggatttcaatatttcatataaagggtcgaggattccgaggcctatgagg
agttgggcagagagtagattgagtgaggagttgcttaaggctgtggagagagctggttac
aagaagccttctccgattcagatggctgcgattccacttgggctgcaacagcgcgatgtt
attggcattgctgagactggttcgggtaagactgctgcctttgttcttcctatgttgact
tatatttcgaggttgcctcccattagtgaggagaatgaggccgaaggaccttatgctgtt
gttatggctcctactcgtgagcttgcacagcagattgaggatgagactgtcaagtttgcg
catttcttgggtatcaaagtggtttccattgttggtgggcagtcgattgaggagcaaggg
tttagaattaggcaaggctgtgaggttgtaattgccactcctgggcgtttgattgattgc
ctggagaggcgttatgctgttcttaaccagtgcaattatgttgttcttgatgaggctgat
aggatgattgatatggggtttgagccgcaggttgtaggggtcttagatgcaatgccttcc
agcaatttcaaacctgagaatgaggatgaagagcttgatgagaagaagatttacagaacc
acttatatgttcagtgccacaatgccgcctgctgtagagcggcttgctaggaagtacttg
aggaatcctgttgtggtcacgattggcacagctggaaagacaactgatttgatcactcag
aatgtgatcatgagcaaggaatctgagaagtttgagaggttaaagaggttgcttgatgaa
cttggtgataagactgctattgtgttcgttaataccaagaagaatgcagactatgtcgct
aagagtttggataagaatggatatcgtgtgaccactttgcatgggggtaagtcacaggag
cagagagaaattagccttgatggttttcgagccaagaaatacaatgtccttgttgcaact
gatgttgcaggacgtgggattgacatacctgatgtggcctatgttattaattatgatatg
cctgggaatattgaacagtacacgcatcgtattggacgtactgggcgtgcagggaagact
ggtgtggccacaacattcttgactatgcacgacactgaagtcttttatgatctcaagcag
atgctcattcagagtaatagtcatgttcctcctgaactggcgaaacatgaggcctcaaag
ttcaaacccggttcagttcctgatagaccacctaggcgtaatgacactatttttactcat
tga
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