Prunus mume (Japanese apricot): 103336445
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Entry
103336445 CDS
T03196
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103336445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmum03009
]
103336445
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
RNases
103336445
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Motif
Pfam:
RNase_T
Phosphodiest
Motif
Other DBs
NCBI-GeneID:
103336445
NCBI-ProteinID:
XP_008237705
UniProt:
A0ABM0PCP1
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Position
LG6:20019587..20028687
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AA seq
612 aa
AA seq
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MPSSLNKCEALVSEEEVSSSSNKNDSKRSTFFDVYGPQSKAEVVFKTPEANSTLNLQEVQ
ELVTWVLGEGFMPSWVFIKNKPLIPKVVMLYVPGLDAALYLSQHRLLKSLKEFCGKPRPV
LALSCMSDGMQTIDALLTCKVKRKREENSTATEKSNLASQQGLWCFSNMHALKRTLLRWL
STYCSALVAFFKLLHSSLARSPLFDDPCSLDLMKDLPFPITFYTLTTKQLEDNGYCFNQP
GFLSTLPAPSGSSHYEMLALDCEMCVTSEGLELTRATLVTIKGKVVLDKLVKPTNTIIDY
NTRFSGITSEMLDGVTTSLKDIQDEFLKLVYKETILVGHSLENDLLALKISHNLVIDTAV
LYRYSRGGSYKSKLRDLARKFLSKEIQQSGDGHDSIEDARAAMELALLKIRHGPDFGTRP
SLIRKRLLTVLSESGKTSSIIDDVSIVKRYASELSHAVPVSSDDEASSKAQKEARNDRVH
FVWTQFSELNRYFKKQAEDPEKLNGKLAEMISLLTCDKNSGNKKGIKCNLASELKEILKR
VDTRIRTLYAALPTNAMIIVCTGHGDIATVYRLRKLLLDRSETTMCRESVVKVLEELQAQ
AEVALCFVGVKS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttccctcaataaatgcgaagctttagtatctgaggaagaagttagctccagc
agcaacaaaaatgatagcaagcgttccactttcttcgatgtttatggccctcaaagtaaa
gcagaggtggtttttaagacgccagaagccaactcaactctgaacttgcaagaggttcaa
gaactagtgacatgggttcttggtgaaggattcatgccgtcttgggtttttattaagaac
aaaccgctcattcccaaagtggttatgctttacgtcccaggcctggatgcagctttgtac
ttatcacagcaccgactacttaagagtctcaaagaattttgtggcaagccaaggccagtt
ttagctctcagctgtatgtcggatggaatgcagacgattgatgccctcctaacatgcaaa
gtgaaaagaaagagggaagaaaatagtacagctacagagaaatctaacctggcatctcaa
caaggtctctggtgtttcagtaatatgcatgcactgaaaagaacactgctcaggtggctg
tctacttattgcagcgctctagttgcgttttttaaactactccattccagtttggctaga
agtcctctctttgatgatccatgctctctggaccttatgaaagatctacctttccctatt
acattttacactcttacaacaaaacaacttgaagacaatggatattgcttcaatcagcca
ggttttctttctactcttccagccccatcaggatcatctcattatgaaatgttggcactt
gattgcgagatgtgtgtcacaagtgagggtttggagctaacaagagcaacattggtgact
atcaaaggaaaggttgtgctagataaattggttaaaccaacaaatactatcatagattat
aacaccaggttcagtggaatcacaagtgagatgttagatggcgtgactacaagtcttaaa
gatattcaggacgaatttctaaagctggtttacaaagagaccatcctagtggggcattcc
ttggagaatgacttgttagcattaaaaatctctcacaatctagtgattgatacagcagtg
ttgtacaggtattcccgtggtggatcttacaaatctaaacttcgggatcttgcccggaaa
tttctttctaaagagatacagcagtcaggggatggccatgacagtattgaagatgcaaga
gctgctatggaattggcacttctaaagattagacatggacctgactttggcacaagacca
tctctgatacggaaaagactcctaactgttttgagtgagagtggaaagacctcctctatc
attgatgatgtttctattgtgaagcgatatgcttctgaattatcccatgcagttcccgtg
tcctctgatgatgaagcttcttccaaagctcaaaaggaggcaaggaatgatagagtgcat
tttgtctggactcagttttctgaattgaatcgttatttcaagaaacaagcagaggatccg
gagaagttaaatggaaaacttgcagagatgatatccttgcttacatgtgataagaattcg
ggaaataaaaaaggtattaaatgcaacttggcatctgaactcaaggaaattctaaagcga
gtggatactagaatacgtaccctctatgctgcattacccactaacgccatgattattgtc
tgcaccggtcatggagatatagcaactgtctatagattaaggaaattgcttttggatcgt
agtgaaaccacaatgtgccgcgagagtgttgtaaaggtattggaagagctccaagcccaa
gctgaggtagcattgtgttttgttggtgtgaagagttga
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