Prunus mume (Japanese apricot): 103336661
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Entry
103336661 CDS
T03196
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03440
Homologous recombination
pmum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103336661
03460 Fanconi anemia pathway
103336661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103336661
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103336661
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103336661
FA (Fanconi anemia) pathway
Downstream FA components
103336661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Pex19
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
103336661
NCBI-ProteinID:
XP_016651141
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All DBs
Position
LG7:675521..686938
Genome browser
AA seq
1275 aa
AA seq
DB search
MVSATPARNPNRTPKSSKNGYQIGGLQVEFPYHPYGAQLAFMSRVISTLDRAHRDGHCHA
LLESPTGTGKSLSLLCSTLAWQQNYKSKHKYANLSHSKPDPKAMTDPTAHGGGFVPEEEP
ASVQLSEKPKPSQFVANNKDQKKQTTPTIYYASRTHSQISQVIREYRKTSYRVPMAVLAS
RRHYCTNAQVHGKENIDEECKHLLKNREVGCLEFKNVQKVKGHASLKKGGCHEAHDIEDL
VKVGKAVKGCPYYAARSLSDDAELVFCPYNYIINPVIRGAMEVDIKGSIVVLDEAHNIED
VARDAGSVDIEEDILHKLQMELEQLCPVDVLVYQPLYELIQGLISWIERKKNKLEKREFQ
HFVSCWTGDKALRELQEANVSQQYFPILLECATKAFKAATDTESDTPHLSGMAVVTLEGL
VSSLTYFFSRNGCHMVDYQLALQRYVKREAGSSGDWTHTLSLWCLNPAVVFKDIADLSLS
VILTSGTLSPMNSFSSELGLQFGTTLEAPHVIDVESQVWPAVISTGPGTLSLNASYKTAD
EYAFQDALGKSLEEIFKIVPGGCLVFFPSYKLMGKLCKRWRGTGQWSQLNEKKNLFVEPR
GGDQEEFDSVLRGYYDSIRQGNKPVFRRKKSANKTSIKNHFAGVQCAGKNNTDGAAFLAV
CRGKVSEGIDFTDDNARAVVXXGIPFPNINDIQVALKKKYNDTYKSSKSLLSGNEWYCHQ
AFRAVNQAAGRCIRHRFDYGAVILLDERYREERNTAYVSKWLKKSIRRYENFDNSLEELK
SFFSDVKERVSNNMVNVSQNFENKDENIHSIGQSEGFTKVKEKKLKKFDTCEQPENSEMK
HDALLKSQDALEVQKFVRINEDADHSKEIIDLECRLQKDSRYPKPSLFTAFSDADPDISI
VQETPNMDGIISTYSPGYFNKDENSGSTSSTIEASSDFTDHLSFQSASLTNSSKASPKAQ
CGFAATPEKNVNLSIQSSMLEIDSSLSLSVNSHTQKRRKSMYSPLANFVYGQCDAPDSRS
PDSTSSVRSMATVDTNRQIEFSVENNCSGHKSNVPRVLTTSNLVASSMSVGCVMDKRLQI
SCLLCKTPLGLPENHLYLSCSITSSLKFHLESLHKEVLKSHTGNTSTGMPVIITDISSVD
QRLCNRTSEGAPRQGIWCEEDGCVFSTIFCPFCISHSNCLGVQVMAANASNVHLLNKMLF
YLDQLHIQNLEASSDKASEEKDILPVVDPSLDRASILNSFDKFSYSPIKQNTGGWRTTKS
KLKLPKRRLLHEAEG
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctgcgactccggcaagaaaccctaaccgtacccctaaaagctccaaaaatggg
taccaaatcggaggtctccaggtggagttcccgtaccatccgtatggggcccagctggca
ttcatgagcagggtcatctccactctagatcgagctcacagagacggccattgccacgca
ttgctcgagtctccgacagggacaggcaaatcgctttctcttctgtgctctactctcgct
tggcaacagaactataagtctaagcataagtacgcaaatctctcgcattccaaacccgac
ccgaaggccatgaccgatccgacggctcacggcggtggctttgttccggaagaggaacct
gcaagtgttcaactatcagaaaagcccaagccatcccaatttgtggcaaataataaggat
caaaagaagcagacaacgcctaccatatactatgcatcgaggacgcattcacaaatttct
caagtcatacgtgaatatcggaaaacttcctaccgggtgcctatggcagtgttggcttca
aggaggcattactgcacaaatgcacaagtgcatgggaaagagaatattgacgaagaatgt
aagcatcttttgaagaatcgagaggttggatgcctggaatttaaaaatgtacaaaaagtc
aaaggccatgcatcccttaagaaaggaggctgccatgaggcccacgatattgaagatctt
gtaaaagttggaaaagctgtgaaaggctgtccatattatgcagctcgttctttgtcagac
gatgcagaattggttttttgcccatataactacatcattaatccagtcattcggggagca
atggaagtagatattaagggatccattgttgttcttgacgaagcacacaatatagaggat
gtagctcgtgatgctgggagtgtcgatattgaagaagacattttgcacaaattgcagatg
gaactggagcagctttgcccagtggatgttttggtataccaacctttatacgaattgata
cagggcctcataagttggattgagcgaaagaaaaataagttggaaaaacgtgaatttcag
cactttgtctcttgttggactggtgataaggctttgagagagctccaagaagctaatgta
tcacagcagtacttcccaatcttacttgaatgtgccacaaaggcattcaaagctgcaaca
gatacagagtcagatacaccacatttaagtggcatggctgttgtgacattggaaggattg
gtctcttcactcacttactttttttcaagaaatgggtgtcatatggttgattatcagctt
gctttacaacgatatgttaaaagagaggctggatcttctggggactggacacatacctta
agtttgtggtgcttgaaccctgctgttgtgtttaaagatattgctgatctttcgttgtcc
gtcattctaacatcagggactctgtcaccaatgaattccttttcatctgagcttggactt
cagtttggaacaacgctggaagctccacatgtaattgatgttgaatcacaggtttggcct
gctgttatttctactgggccgggtaccttatcattgaatgcaagttataagacagcagat
gaatatgccttccaggatgcacttggaaaatccttggaggaaatttttaagattgttcca
ggcggctgtcttgtgttcttcccaagttataagctgatgggaaaactatgcaagcgttgg
cgtggaacaggacaatggtctcagttaaatgaaaaaaagaacctttttgttgagccaaga
ggaggagaccaggaggaattcgattctgttttgaggggttattatgattcaattcgtcag
ggtaataaaccagtttttcggagaaagaaaagtgccaacaagacatcaatcaaaaatcac
ttcgctggagtccagtgtgcaggcaaaaataacactgatggagctgcttttcttgctgtg
tgccgagggaaggtttcagaaggaattgacttcacagatgacaatgctcgagcggtggtn
nnnnncggcattccatttcccaacataaatgatattcaagttgccttaaagaagaaatat
aatgatacatataaatcatccaaaagccttctgagtgggaatgagtggtactgccaccaa
gccttccgagctgtaaatcaagctgcaggacgttgtattcgccataggtttgactacgga
gctgtcatcttattagatgaacgctatagggaagaaagaaatacagcatatgtgtcaaag
tggctaaagaaatccatcagacggtatgagaactttgacaactcattggaggaattaaaa
tcctttttcagtgatgtcaaggaaagggtaagcaataacatggttaacgtatcacagaat
tttgagaataaagatgaaaatattcattctatcggtcaaagtgaaggatttacaaaagtg
aaagaaaagaaattgaagaaatttgatacctgcgaacagccagagaattctgagatgaag
catgatgccctgctgaaatctcaagatgctttggaagttcagaaatttgtgcgaataaat
gaggatgcagaccatagcaaggaaattattgatctagaatgtcgtcttcagaaagattca
aggtacccaaagccatctctgtttacggcattctctgatgcagatcctgacatttccatt
gtccaggaaacccctaatatggatggtatcatttccacatacagtccagggtacttcaat
aaagatgagaattctggttcaacttcaagcacaattgaggcctcttctgactttacagat
catttgtcatttcagtcagcatccttaaccaatagtagcaaagcttctccaaaagcccag
tgtggctttgcagctactcctgaaaagaatgtgaatttgagcatacagagctcgatgcta
gaaatagactcatctttgagtttgagtgtaaattctcatacccaaaaaaggagaaagtcc
atgtattcaccactggctaactttgtttatggacagtgtgatgctcctgattccagaagt
cctgattctactagttctgtaagatcaatggcaactgtagacacaaatcgccaaattgaa
tttagtgttgagaataattgttcaggacacaagtccaatgttcctcgtgtgctcacaact
agtaatttggttgcttcatccatgtccgttggttgtgtaatggacaaaagactacaaatt
tcttgcttactctgcaaaactccattgggccttcctgagaatcatctatatctatcatgc
tcaataacttcgtcattgaaatttcacttagaatctcttcataaagaagtattgaagtct
cacactgggaacacatccacaggcatgcctgttatcataactgacatttcatcagttgat
cagcgactctgcaacagaacttctgaaggtgctcctcggcagggtatatggtgtgaagaa
gatggttgtgttttcagtaccatcttctgccccttctgcattagccacagtaattgcctt
ggagtacaggtcatggcggctaatgcatcaaatgttcatttactgaacaagatgctgttt
tacttagatcagttgcatattcaaaatcttgaagcatctagtgacaaggcttcagaagag
aaagatatcttgcctgttgttgatccaagcttggatagagcttctattctaaattccttt
gataaattctcatactccccaatcaagcagaacacgggaggctggaggactacaaaatca
aagcttaaactacccaaaagacgcttacttcatgaagcagagggttaa
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