Prunus mume (Japanese apricot): 103336719
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Entry
103336719 CDS
T03196
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34 isoform X1
KO
K10899
ATP-dependent DNA helicase Q1 [EC:
5.6.2.4
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103336719
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103336719
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
103336719
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RQC
HRDC
ResIII
HEAT_ATR
Motif
Other DBs
NCBI-GeneID:
103336719
NCBI-ProteinID:
XP_008238038
UniProt:
A0ABM0PDH3
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All DBs
Position
LG7:complement(1484580..1501770)
Genome browser
AA seq
706 aa
AA seq
DB search
METEEILAEELLNVEVEIQGVQDQIKILLDQQERLYERQSELKAILEACKESGYPVNGAS
TTVEDWSGPFEWDSQADDTRFNIFGISAYRANQREIINAVMSGKDVLVIMAAGGGKSLCY
QLPAILRDGVALVVSPLLSLIQDQVMGLAALGIPAHMLTSTTSKEEEKLIYKALEKGEGD
LKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKT
QFPNVPVIALTATATQKVQSDLMEMLHIPRCVKFVSTVNRPNLFYMVREKSSVGKVVVDE
IAEFIRDSYSHNDSGIVYCFSRKECEQVAKELRERGISALHYHADMDVNARENVHMRWSN
GKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSQCLLYFRPGD
VPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSSFFRHFAEPLQDCNGMCDNCAFSNEV
KEVDASRHAKLIISLLQDTQENDQRLTVLQLVDKIKAKHKELGSELKREEIEQLVIKLIL
DRTLKEEFQHTAYSTNAYVTIGPLAKQVLHGKCSVKLEISSGQNKVAGIKSVKRSCASSG
LELKLDELRKELSSVHGGIFPHSVLSTQQINMISAQKPNSMELLENIIGKLKAEKYGSRI
LEQVNTYANSTQREDAKEDQDIENRASKRLKSKKHLVLVESSDDES
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgaagagatattagcagaagagctgctaaacgttgaggttgaaattcaaggc
gtccaagaccaaatcaagatattgcttgaccaacaggagaggttatatgaaaggcaatct
gaattgaaggctatacttgaagcatgtaaagaatcaggttatcctgttaatggcgcttca
actactgtggaagactggtctgggccatttgagtgggattctcaagctgatgatactagg
ttcaatatatttggcatatctgcatatcgtgcaaatcagcgagagattatcaatgctgtc
atgagtggaaaagatgttctagtgattatggctgcaggtggcggcaaaagcctctgttac
cagcttccagcaattcttcgtgatggagttgctcttgttgttagtcctttgctttctttg
attcaggaccaggtgatgggtttggcagccttaggcattccagctcatatgttgacatca
actactagtaaggaggaggagaagttaatatacaaggcccttgaaaagggggaaggagat
ttgaaaatattgtatgtgactccagaaaagatatcaaagagtaagaggtttatgtcaaaa
cttgaaaagtgccatcatgctggtcgtctatctctcatttctattgatgaggcacattgc
tgcagccagtggggtcatgattttcgacctgactacaaaagtcttggtatcctcaagact
cagtttcccaatgttcctgtgattgctttgactgcaactgctacccagaaagtccaaagt
gatctgatggagatgctccacattccaagatgtgtaaagtttgtcagcacagtcaacaga
ccaaatctcttctacatggtacgagagaagtcttcagttggcaaggtggtggttgatgaa
atcgcagaattcatccgagactcttattcacataatgattctggcatagtttattgcttt
tctagaaaggaatgtgagcaggttgcaaaggagttgcgagagagaggaatatcagctctt
cattatcatgcagacatggatgtaaatgctcgtgaaaatgttcatatgcggtggagtaat
ggaaaactacaagtcatcgttggcacggtagcatttggcatgggaatcaacaaaccagat
gtcaggtttgtcatccatcacagcctaagtaaatcaatggaaacatactaccaggaaagt
ggccgagctggacgagatggactcccttctcaatgcctactttactttagacctggtgat
gttcctagacagagttcaatggtcttctatgaaaattccggattgcagaacctttatgac
atagtacgatattgtcagtcaaaaagacaatgtcgccgtagttcgtttttccgccatttt
gctgagccattacaggactgcaatgggatgtgcgacaactgtgcattttcaaatgaggtt
aaagaagtggatgcctctcgtcatgcgaagcttattatttctttgctgcaagatacacaa
gaaaatgatcagagattgacagtgttgcaattagttgataaaattaaagcaaagcacaag
gaactaggttctgagctgaagagggaggaaatagagcagcttgtcataaaactcatatta
gatagaactttgaaagaagaatttcagcatacagcttattccacaaatgcatatgtaaca
ataggacccttggcaaagcaagtattgcacgggaagtgcagtgttaaacttgaaatttct
agcggacaaaataaagtagctggtataaaatcagttaaacgcagttgtgcttcctctggt
ttggaattgaagctagacgagctcagaaaggaactctcctcagttcatggaggaatattc
ccgcattctgttctctcgactcaacaaatcaatatgataagtgcccagaagccaaattct
atggaactgttggagaatataattggaaaactcaaggcagagaaatacggaagtagaata
cttgagcaagtgaatacgtatgcaaattcgacacagcgggaggatgccaaagaagatcaa
gatattgaaaatagagcctcaaaaaggctaaagagcaaaaagcatcttgttcttgttgag
agcagtgatgatgaatcctga
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