Prunus mume (Japanese apricot): 103336774
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Entry
103336774 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 2-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103336774
09122 Translation
03013 Nucleocytoplasmic transport
103336774
03015 mRNA surveillance pathway
103336774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103336774
03041 Spliceosome [BR:
pmum03041
]
103336774
03009 Ribosome biogenesis [BR:
pmum03009
]
103336774
03012 Translation factors [BR:
pmum03012
]
103336774
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103336774
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103336774
mRNA cycle factors
Stress granule specific factors
103336774
Spliceosome [BR:
pmum03041
]
Complex C
Other components
EJC/TREX
103336774
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
90S particles
Helicases
103336774
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
eIF-4
103336774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103336774
NCBI-ProteinID:
XP_008238092
LinkDB
All DBs
Position
LG7:complement(1619896..1628478)
Genome browser
AA seq
273 aa
AA seq
DB search
MVAPPPLTTKPPTGPAAGSSNLRGTTIEHGGTSHQGGLVTTTDLGPVLEQLQAFPPLPPR
SMYALAYTSNETLACVCLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFFSV
EREEWKFDALCDPYETLTITRAVIFCNTKRKVDWLTEKLRSNNFTVSSMHGDIPQKERDA
ITQEFRSGNSRVLITTDVWARGLDLFQVSLVINFDLPNTRELYIHRIGRSGRFGRKGVAI
NFVKSDDIKILRDIKQYYSTQIDEMPMNVADLI
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaccaccacctctcaccaccaagccacctaccggacctgcggccggatctagc
aaccttcgtggcaccaccatcgagcatggtggaacctcccatcaaggtgggctcgttacc
accactgacttaggcccggtcttggagcaacttcaagcattccctccattgcctccacgc
tcgatgtacgctcttgcatacacctccaatgaaaccctagcctgtgtttgcttagtttct
gctacacttcctcatgaaatattggagatgaccaacaagtttatgactgaccctgtgagg
atacttgtcaaacgtgatgaattgactttggagggaatcaagcaatttttcttctcggtt
gaaagagaagagtggaagtttgatgcattatgtgatccctatgagactcttacaattaca
cgagctgttattttctgcaacacaaaacgaaaggtggactggctcaccgaaaagttgagg
agtaataactttactgtgtcttcaatgcatggagacatacctcagaaggagagagatgct
attacccaagagtttcgcagtggcaattctcgtgtcctcatcacaacagatgtttgggca
cgaggccttgacctttttcaggtttccttggttatcaattttgatcttccaaacactcga
gagctgtatattcatcggattggtcgttctggtcgttttgggcgcaagggtgtggcaata
aactttgtcaaaagcgacgatataaagatcttaagagacattaaacagtactacagcacc
cagattgatgaaatgccgatgaacgttgcagatttgatatga
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