Prunus mume (Japanese apricot): 103336936
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Entry
103336936 CDS
T03196
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03030
DNA replication
pmum03420
Nucleotide excision repair
pmum03430
Mismatch repair
pmum03440
Homologous recombination
pmum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103336936
03420 Nucleotide excision repair
103336936
03430 Mismatch repair
103336936
03440 Homologous recombination
103336936
03460 Fanconi anemia pathway
103336936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmum03000
]
103336936
03032 DNA replication proteins [BR:
pmum03032
]
103336936
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103336936
Transcription factors [BR:
pmum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103336936
DNA replication proteins [BR:
pmum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103336936
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103336936
MMR (mismatch excision repair)
103336936
DSBR (double strand breaks repair)
HR (homologous recombination)
103336936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
CDC24_OB3
RADX
zf-CCHC_3
DUF223
zf-CCHC_5
DUF6558_C
Motif
Other DBs
NCBI-GeneID:
103336936
NCBI-ProteinID:
XP_016651413
LinkDB
All DBs
Position
LG7:1770064..1774065
Genome browser
AA seq
873 aa
AA seq
DB search
MAVTLTEGAIMKICTGEYHDETWKPILQVLDVRMVNTARSGAQPGPDNERYRVLISDGSH
HQXXXXXXXXXXLFQRGLLQKGSIVCLKQFTCTQVQNRLIIIIIELDLVLDKCDLIGEPV
AGPKYLNAQSSGPLPGNAQSIGGSAHSGGAVHQTVTKATPEQPRVNQSFGSAYSGGSDPG
RHVTMSTTPNQPKPEPGFGFPGSAPLSGSYSNQNTGFRSPRPEVPQPTVNAYARPPQPTY
QQPSPTYPNRGPVVKNEAPPRIMPIAALNPYQGRWTIKARVTAKGELRHYSNPRGDGKVF
SFDVLDSHGGEIRATCFNAVADQFYNQIEVGKIYLISKGSLKAAQKAFNNLNNDHEITLD
HTSIIQPCFEDDDSIPKQNFHFCRISDVEGLNNNSIVDVIGVVSSINPPASILRKNGVET
QKRSLQLKDMSGRSVEVTLWGNLCNAEGQRLQSMCDSGAFPVLAVKGAKVNDFNGKAVGT
IPSSQLFIEPNIEEAREMRSWFDKEGRNTSCIPISRETVGVGRTDIRKTISQIKDERLGT
SEKPDWITVSGTVSFIKVDSFCYSACPLMNGDRQCSKKVTNNGDGKWRCDRCDQSMEECD
YRYLLQLQIQDHTGTTWVTAFQEGGEEIMGIPAKDLYFLKYEEQDDEKFVEITRKVLFTK
FNFKLKIKEEIYGDEQRVKSTVLKAEKMNFSSEARFHLELMNKLKMETIGSSASEGDNVM
PSAGMNATGVGNNASRQPTLDVNVGYNNNAGREFGGPESSGGTYRNQFSSARFPSTGSVG
SYLSCNSCGDAGHSPMNCPSVMNGPGQSSGASYNNRVSSRPGVGNTSGDCYKCHQPGHWA
RDCPGLNTTPAYGGSGGNPVRYGGVANQRVGGF
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgacgctaacagagggggcgataatgaagatttgcacaggggagtaccatgac
gagacctggaagcccatcttgcaagtgctcgacgtgaggatggtcaatacagcgcgcagt
ggggcccagccgggccccgataacgagagatacagggttttgatctcggatggttcccac
caccagnnnnnnnnnnnnnnnnnnnnnnnnnnnncactgtttcagcggggtctgcttcag
aagggctccatcgtttgcttgaagcaattcacctgtacccaagtccaaaaccgcctgatc
atcattataattgaattggatttggtgcttgataaatgtgatctcattggagagcctgta
gcaggacctaaatatctgaatgcacagtcctcagggccattacctggaaatgcccaatct
attggtggcagtgcacattctggtggcgcagttcatcaaactgtgactaaagctactccg
gaacaacctagagtaaatcaatcatttggtagtgcttattctggtggttctgacccagga
agacatgtgacaatgagtactactcccaatcaacctaaaccagagcctggttttggtttt
cctggatcagcaccattaagtgggtcatatagcaatcagaacacaggttttcgcagccct
agacctgaggttccacagccaactgtaaatgcttatgctcggccgcctcagccaacttat
caacagccatctccaacgtatcctaatagaggaccagttgtcaaaaatgaagcccctcct
agaataatgccaattgctgctctgaatccataccaagggcggtggacaatcaaggctaga
gtgacagctaaaggagaacttaggcactacagcaatcctcgtggtgatgggaaagttttt
tcttttgatgttcttgattctcatggtggagaaattcgagcaacctgttttaatgctgtg
gctgatcaattctacaaccagattgaagttggcaagatttatttgatctccaagggtagt
ttaaaagcagcccaaaaggctttcaacaacctcaacaatgaccatgaaattactttagat
cacacatcgataatacagccatgttttgaggatgatgactcaattccaaagcagaatttc
catttctgtcgtataagtgatgttgaaggcttgaacaacaactctattgtcgatgtaata
ggtgtggtatcctccatcaatccccctgcttctatactgaggaaaaatggtgttgagact
cagaagagatccctccagttgaaggatatgtctggtcgtagtgttgaggtaactctatgg
ggaaatttgtgcaatgcagagggacaaagactgcaaagtatgtgtgattctggtgcattc
ccagtgctggctgtaaaaggtgctaaagttaatgatttcaatgggaaggcggtagggacc
attcctagtagtcagctttttatagagccgaatatcgaagaggctcgtgagatgaggagt
tggtttgacaaggaaggaagaaatacctcatgtatccctatttccagggaaacagtaggt
gtgggtagaacagatatccgaaagactatatctcaaattaaagatgagcggctggggact
tccgagaagccagactggatcacagttagtggaactgtttcatttataaaggttgatagt
ttctgctattcggcatgcccgctcatgaatggtgatcgacaatgcagcaaaaaagttaca
aataatggagatggcaaatggaggtgcgatagatgtgatcagtccatggaagaatgtgac
tacagatatttactccagttacagatacaggatcatactggcacaacatgggtaacggca
tttcaggagggtggtgaagaaatcatgggtatacctgcaaaagatttgtattttttgaaa
tatgaagagcaagatgatgagaagtttgtagaaatcactcggaaggttctctttactaaa
ttcaatttcaaattgaaaataaaggaggagatttatggtgatgaacaacgtgtaaaatca
acagttttgaaagcagagaagatgaacttttcatcggaggctagatttcatttggaattg
atgaataaacttaagatggagactattggttcttctgcctccgagggggataatgtaatg
cccagtgctgggatgaatgctactggagttgggaacaatgcaagtagacaacctacacta
gatgtgaatgttggttacaacaacaatgctggtagagaatttggaggaccagaaagttca
gggggtacctatcgaaaccagtttagtagtgctaggtttccttcaactggctctgtcggt
tcatatctgagctgtaacagttgtggggatgctggccatagccccatgaactgcccaagt
gtaatgaatggcccagggcagtcatcaggagcgagctataacaacagagtatcttctagg
ccaggtgttggcaatacttctggtgactgctacaaatgccaccaacctggacactgggca
agagactgtcctggcttgaacactactccagcttatggaggcagtggaggcaaccctgtg
agatacggaggtgttgcaaaccaaagggtcggcggcttttga
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