Prunus mume (Japanese apricot): 103337481
Help
Entry
103337481 CDS
T03196
Name
(RefSeq) small RNA degrading nuclease 3
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103337481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmum03009
]
103337481
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
RNases
103337481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
TMF_DNA_bd
DUF7637
Motif
Other DBs
NCBI-GeneID:
103337481
NCBI-ProteinID:
XP_008238873
LinkDB
All DBs
Position
LG1:19811424..19815572
Genome browser
AA seq
516 aa
AA seq
DB search
MDAFIATAEKKVLVEIVKLSQKRGMKGNKGDWKQFLNIYDKKFGASLSDPGKRSNDVLTA
YLKTFDKEDDLKVLAKVVQCHSNRQAVDQLLKTFPENESPEQSLVRSTLEHPQYPLDYSF
PSHEQDWVVSKRGKKSKAMISNGMVAVDCEMVLCEDGSEALVKVCVVDENLQVKLDELVN
PRKKVADYRTEITGVSASDLDRVTCTLADIQKRLKKLLSGETILVGHSLCNDLQALKIDH
ARVIDTAYIFKYSDGPIFRKPSLNNLCKSVLGYEVRKPGSPHNCLDDACAAMKLVLAKIK
REIGDIIPPVQEDVREVNMAKLLLHRIPITVPSEELHNAIPGNYTIEVKQPSVKAQGDKY
SAFAIFKNPQEADQAYEKVQGNKEKDSSGRPQKLISFKLSKGVLTDLYLRKMAQDDSCAQ
VSSKRALEVEENSGVHKKQKTDQNIEEEMVADLSQCCDHLKEIERLKQEQQKVSEQCCDH
LKEIEGLKQQLKNKEFEISTLNKIVSKYQGGKKKGK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggatgcttttatcgccaccgcagagaaaaaggtccttgtggaaattgtgaagttgtcc
caaaagcggggaatgaagggtaataaaggagactggaagcagttcttaaatatttatgat
aagaagtttggggctagcttgagtgatcccggaaagaggtcaaatgatgtattgactgcg
tatttaaagacatttgataaagaggatgacttgaaggttttggctaaagttgtccaatgc
cattcaaatcgccaagcagttgatcaattgttaaagacttttccagaaaatgaatcccca
gagcagagtcttgtccgttcaactctcgaacacccacaatatccattggattattcattt
ccttcacatgaacaggactgggtagtttcaaagcgcggtaaaaagtccaaggcgatgatt
tcaaatggaatggttgctgttgattgtgagatggttctatgtgaagatggctctgaagct
ctagtaaaagtgtgtgttgttgatgaaaatttacaggtcaagctagatgaactagtaaac
cctcgtaaaaaagttgctgattacagaactgagattacaggagtttctgcatcagatttg
gatagagttacatgtacattggctgatatacagaaacgcttgaagaagttgttatcaggt
gaaactattttagtgggacacagtttgtgtaatgacctgcaagcattgaagatagaccat
gcaagggtgattgatactgcatatatctttaaatattcagatgggcctatttttagaaaa
ccttccttgaataatttgtgcaagtctgtattgggttatgaagtccggaagccaggttct
ccacacaattgtctagatgatgcttgtgctgcaatgaaacttgttcttgctaagataaag
cgtgaaattggcgatattatccccccagttcaggaggatgtacgtgaagttaatatggca
aagctacttctccacaggataccaatcacagtgcctagtgaagaattgcacaatgccatt
cctgggaactatacaatagaagtcaagcaaccttctgttaaagctcaaggagataaatat
tctgcctttgctatctttaagaatccacaagaagcagatcaagcatatgaaaaagtccaa
ggcaacaaggaaaaggactcatctgggcggccacagaagcttatttcatttaagctcagc
aagggtgtgttaactgatttatatcttcgtaaaatggcacaagatgattcctgtgcccaa
gtctcttctaagagagctctagaagttgaagagaactcaggtgtacataagaaacaaaag
acagatcagaatatagaagaggagatggtggcagacttaagtcagtgctgcgaccacctt
aaagagatagaaagattgaagcaagaacaacaaaaggtgtcagagcagtgttgtgatcat
ttaaaagagattgaaggattgaagcagcaacttaaaaataaggaatttgaaatctcgaca
ctgaataagattgtttccaaataccaagggggaaagaaaaaagggaagtag
DBGET
integrated database retrieval system
