Prunus mume (Japanese apricot): 103337775
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Entry
103337775 CDS
T03196
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103337775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmum04121
]
103337775
Enzymes [BR:
pmum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
103337775
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
HECT type E3
103337775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_TRIP12_N
HECT
ARM_ARMC5
Arm
Adaptin_N
TPR_IMB1
Motif
Other DBs
NCBI-GeneID:
103337775
NCBI-ProteinID:
XP_008239171
UniProt:
A0ABM0PG65
LinkDB
All DBs
Position
LG1:19924789..19932627
Genome browser
AA seq
1539 aa
AA seq
DB search
MASRGQKRTEVDDELPADKRACSSLEFRPSSSNSSAQTHMNSMNSTPETNDHDMDTTSSA
SASSRSEGEHEKDSAYGSCDSDDADPRHSELRDYQRRRSSGDHGKFKRILSSLSEETDPS
GQLAVLTELCEVLSFCTEDSLSGMTSDLLSPLLVRLARHETNADIMLLAIRAITYLCDVH
PRSSAFLVRHDAVPALCQRLMAIEYLDVAEQCLQALEKMSREQPLACLQAGAIMAVLNYI
DFFSTSIQRVALSTVVNVCKKLPSECPSPFMEAVPILCNLLQYEDPQLVENVAVCLIKIT
ERVSQSTEMLDELCKHGLIRQVTHFMNLNNRTTLSQPICNGLIGLLGKLSSGSVVAFRTL
YELNISSTLRDILSTYELSHGMSSSHVVDGHCNQVYEVLKLLNELLPTSAGDQDDPQLSD
KESFLVNQPDLLQKFGMDILPFLIQVVNSGANLYICDGCLSVINKLISLSTSDMLVELLQ
NANISSFLAGVFTRKDPHVLILALRITELLLQKLSDYFLDSFIKEGVFFAIDALSTPEKC
QLVTLEKCSRLVFPVFSGTQPLFDPSQKSASREILRCLCYAFATGKSPSVSETGSCMLEK
DSVYNLAKHIRTTYFAPELYDPGKALTDVLQKLRKFSAALSDLNTSMNNDALDQHEERFY
GIMRQVMEKLGGGEPISTFEFIESGILKSLMTYLSNSQYLRQKGEVSAVNTDIYSVEKRF
EVFARLLFSPSDLHSADVPIITLIRKLQNALSSLENFPVILSHMPKLRSSYAAVPYGRRT
TYTCIRVRFVKDKGDTYLCDYSEDVLTVDPFSSLHAIQEFLWPKVNAKRTNHIKSATRVK
RQSESPPLRSPSNASSSQGGSPHPMDPERMSMDLPELQETVEKLVQCPSDEDTEMEEQCP
ASCSNEDSSSKLLLYLDGQQLEPALTLYQAILQQQMKEHEIVIGAKLWSQVYTLTYRKAE
GQRKECLYSAESSAVSDKVGVYELYTSFFSSMFSCELASDLEKSSPTYDIIYLLKSLESM
NKFIFYLMSHERICAFAEGKINDLDNFQMSVIPVPQNEFVSNKLTEKLEQQMRDALAVSI
GGMPLWCNQLMTSCPFLFSFEVKCKYFRLAAFGSLLVQPHSPSYRDSGVASDRRLSSGGM
PRKKFLVFRNQILDSAAEMMDLHASHKVLLEVEYNEEVGTGLGPTLEFYTLVSHEFQKSG
LGMWREDHGSFIYGTTHAEDTGILICPLGLFPRPWSSTLDTSDGLQFSEVIKKFVLLGQI
VGKALQDGRVLDLHFSKAFYKLILGQELGLYDIQSFDPELGRTLLEFKALIDRKKFMESV
HGGTTVEFDSCFRKTKIEDLCLDFTLPGYPDFVLSSRPDNKMVNVTNLEDYVSFVADATV
KAGITRQVEAFKSGFNQVFPIEHLQIFTEEELEHLLCGERDSWAFNELLDHIKFDHGYTV
SSPPIVNLLEIIHKFDQEQRRAFLQFVTGAPRLPPGGFASLSPKLTIVRKHSSNCADLDL
PSVMTCANYLKLPPYSSKERMKDKLLYAITEGQGSFHLS
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtcgtggccaaaagcgtactgaggttgacgatgaattgccggcggataagcga
gcatgtagttctttggagtttagaccgagttcatcgaactcttctgctcaaacccatatg
aattctatgaactccacacctgaaaccaatgaccatgatatggacactacatcctctgct
tcagcgtctagccggtccgagggagaacatgagaaggattcagcatatgggtcttgtgat
tctgatgatgcagaccctagacacagtgaactccgggactatcagagacggagatcttcg
ggtgatcatggaaagtttaagaggatcttatcatctttaagtgaagagactgatccttct
ggccagttagctgtgcttaccgagctatgtgaagtcctatcattttgtacagaggattca
ctatccgggatgacatcagacttattatcaccgcttcttgttcgtctcgctaggcacgag
actaacgcagatatcatgctattggctataagagctataacttatttatgtgatgtgcat
cctagatcatcggccttccttgtccgacacgatgcagttccagctctttgccaaagactt
atggctattgaatacttggatgtagctgagcagtgtctacaagcattggagaaaatgtca
cgggagcaaccacttgcgtgcttacaggctggggcaataatggctgttctgaattatatt
gatttcttttcgacaagcatacagagagttgccctttccacggtggtgaacgtttgtaag
aaacttccttctgaatgcccttcacctttcatggaggctgttcctatactatgcaatctt
ctccagtacgaggatcctcagcttgtcgaaaatgttgctgtttgcttgattaaaattaca
gaacgagtgagtcagtctactgagatgctggatgaactttgtaagcacgggctgattcgt
caagtcacgcattttatgaacttgaataaccgaacaactctatcccaaccaatttgtaat
ggtttgatagggctacttggaaaactttcttctggttcagttgtagccttcaggactcta
tatgagctcaatataagcagcactttaagggatatattatctacatatgaactctcacat
ggaatgtcgtctagtcatgtggtggatgggcattgcaatcaggtatatgaagttttgaag
ttgctaaatgagcttctacctacttcagctggagatcaagatgatccacagctgtcagat
aaggaatcttttctagttaatcaacctgatctactgcaaaagtttgggatggatatactt
cccttcttgattcaggttgtaaattctggtgccaatttatatatttgcgatggatgctta
tctgttatcaacaagttaatttctttgagcacatctgacatgcttgtggaactgcttcag
aatgccaacatttcaagttttttggctggagtatttacacgaaaggatccccatgtgttg
attttagctctacggatcactgagctcctcctgcaaaagctttctgattattttttggac
tctttcataaaagagggcgtcttttttgccattgatgcactgtcaacaccagaaaagtgt
caattggtaaccctggaaaaatgttcgaggctggtgttcccagtgttcagtggcacacag
cctttgtttgatcctagtcagaagtctgcttcaagggagatcctgagatgcttatgttat
gcttttgctactggtaaatcaccatcggtgtcagagacaggaagctgcatgcttgaaaag
gattctgtatataatcttgcaaagcatataaggaccacgtactttgcaccagaattgtat
gaccctgggaaagcattaactgatgttcttcagaagcttagaaaattttctgctgcatta
agtgatttgaacacatccatgaataatgatgctcttgatcagcatgaagaaaggttctat
ggtataatgcgtcaagtaatggaaaagcttggtggaggagaacccatttccacttttgaa
tttattgaaagtggaattctgaagtccttaatgacttacctgtccaatagccagtacttg
agacaaaagggggaagttagtgctgttaacactgatatctattctgtagaaaaaagattt
gaggtgtttgcaaggctattattttctccttcagacctgcactctgcggacgtacccata
ataacattaatacggaagttgcaaaatgcactatcttctttggaaaatttccctgttatt
ttgagccatatgcccaagttaagaagttcatatgctgcagttccatatggacgtcgtaca
acgtatacatgtattagagttcgttttgtgaaagacaaaggggatacatacctatgtgat
tactcagaagatgttctgactgttgaccccttttcttcattgcatgccattcaagaattt
ctgtggcctaaagtcaatgcaaaaagaaccaaccacattaaatcagctacacgagttaag
cggcaatctgaaagtccaccacttcgatcaccatctaatgcaagctctagtcaaggggga
agcccgcatcctatggaccctgagcgcatgtcaatggacttacctgagttgcaggaaact
gtggagaaactagtgcaatgtccatctgatgaggatactgagatggaagaacagtgtcct
gcatcttgtagcaatgaagattcttcttcgaaactgttactttaccttgatgggcaacag
ctggagccggcattgacactataccaagcaattctgcaacaacaaatgaaagaacatgaa
attgtcattggtgcaaaactgtggagtcaagtatacacgttaacatatagaaaggctgaa
ggacaacgtaaagaatgtctttattcagcagaaagttctgctgtatcagataaagttggg
gtgtatgaattgtacacttcatttttctccagcatgttttcttgtgagcttgcttctgac
ttagagaagtcaagtcctacttatgatataatatatcttcttaaaagcttggaaagcatg
aacaagttcatcttttatctgatgtctcatgagagaatatgtgcttttgctgaagggaaa
atcaatgacttggataattttcagatgtcagttattccagtgccacagaatgagtttgta
agcaataaattgacagaaaaactggaacagcagatgcgggatgctttagctgtgtccatt
ggtggtatgcctttgtggtgtaatcagctgatgacatcctgtccttttttatttagtttt
gaggtcaagtgtaagtactttcggttggcagcatttggttcactcctagttcaacctcat
tcaccatcgtatagggattcaggggtggcaagtgacaggcgtctaagctctggaggcatg
cctcgaaagaagtttttggttttccgcaaccaaattcttgattctgctgccgaaatgatg
gacctgcatgccagtcataaggtacttcttgaggtggaatacaacgaagaagttggtact
ggccttggtccaacattggaattctataccctagttagtcacgagtttcagaagtctggt
ctgggcatgtggagagaggatcatgggtcttttatatatggtacaacccatgctgaggat
actggaattttgatatgtcctttaggtcttttccctcgtccatggtcatccactttggat
acatctgatgggctacagttcagtgaagtaattaagaagtttgtccttttggggcaaatt
gtaggaaaagcgcttcaggatgggcgagtcttggatctgcatttctccaaagccttctat
aaacttattcttgggcaggaacttggtctgtatgacatccagtcatttgatcctgagctt
ggcaggacactgctagagtttaaggctcttatagacagaaaaaagtttatggaatctgta
catggaggaacaacagtcgaatttgactcatgctttcggaaaaccaaaattgaggatctt
tgccttgactttacacttccgggttatcctgattttgttctttcttctaggcctgataat
aaaatggtaaatgtaacaaacttggaagattatgtttcatttgtggcggatgcaactgta
aaggctggaattactagacaagtggaagccttcaaatctggtttcaaccaggttttccct
attgaacatcttcagatattcactgaagaagaattagagcatttactatgtggagaacgc
gattcgtgggctttcaatgagctccttgatcatatcaagttcgaccatggctacactgtt
agcagtcctcccattgttaatttgctggaaatcatacacaagtttgaccaagaacagcga
agagcgtttctgcagtttgtgactggggcacctcgcctacctccaggaggttttgcatct
ctcagtccgaagttaactattgttcgaaagcattctagcaattgtgctgacttggaccta
ccaagtgtgatgacttgtgcaaattatcttaagctgccaccttactcttcaaaagagagg
atgaaagataagctcttatatgccattacagaagggcaaggatcattccacctttcataa
DBGET
integrated database retrieval system
