KEGG   Prunus mume (Japanese apricot): 103338045
Entry
103338045         CDS       T03196                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pmum  Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pmum03009]
    103338045
Ribosome biogenesis [BR:pmum03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    103338045
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_IP5PC_F Beta-prop_HPS5 Beta-prop_RIG_2nd WD_LRWD1 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_WDR75_2nd ANAPC4_WD40 Beta-prop_WDR19_1st VPS8_N WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_VPS8 Beta-prop_SPT8 PROPPIN Ge1_WD40 CNH
Other DBs
NCBI-GeneID: 103338045
NCBI-ProteinID: XP_008239447
LinkDB
Position
LG7:complement(12669038..12672536)
AA seq 467 aa
MAKNGGEAVVVCSDKSMGIGITIWGIDKGDRLLHIPTCASAPHGLVCLRNQFLVASQIHK
HGSVGGGAISMWPLNKPQQPIRSYPLEAIGPLSCTKDGVYLAGGALSGNVYLWEVANGKL
LKTWRGHHKSLNCMLFSDDGSLLVSASDDGMICVWSMVGLLDMEDSQSFPSLLHYSMEHK
SSITGLLTTSGSSNVVLISSSLDGSCKVWDLVLGKLMQTQVYPLAITAVVLHPTEQLFFS
GSIDGRIFVNKLEIGLVENSLAAAEDQKAVIKGHKGAVTALTFSQAGLVSASEDCTICIW
DITNWAILRRFDHNKGAVTNLAVIPQSSLLSVSNHRRVSNAFGVSSLDKYPQPPNSSKEK
IPLLSSCHFLKGNHTTHSGQQIYDTEEEFSPAAMQMKLETILEHRMWATRMAKHVMEMNT
HLQTHLLDLMQSGLLRSTSTEIDSPPTKKRETRMFDESPPFQGEKQP
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggctaaaaatggtggcgaggcagtggttgtgtgcagcgacaagagcatgggaataggg
ataactatatggggcatagacaagggggatcgtcttcttcacataccaacctgtgcttct
gctcctcatggtcttgtgtgcctgagaaaccagttcctagtagcttctcagattcacaaa
catggctctgttggaggaggggccatttctatgtggcccttgaacaagcctcagcagcct
attcggagctacccactagaggccattgggccactttcttgcacaaaggatggtgtatat
cttgcaggtggtgctctatctggaaacgtttacctttgggaggttgctaatggaaaattg
ctcaaaacttggcgtggacatcataaatctttgaactgtatgctgttttctgatgacggc
tctcttctcgtttctgcttcagatgatgggatgatatgtgtgtggtctatggtcggtttg
ctggacatggaagattctcaaagctttccctcattattacattattcaatggagcataaa
tcctctataactggcctgttaactacatcaggcagttcaaatgtagtcttaatatcaagc
tcacttgatggctcatgcaaggtatgggatttagtcttgggaaagcttatgcaaactcaa
gtttatccgctagcgataactgcagttgttcttcacccaacggagcagctctttttttct
ggaagtatagatggaagaatttttgtgaacaaacttgaaatcggactggtagaaaattct
ttggctgctgctgaagatcaaaaagccgtgataaaaggacacaagggagctgtcactgca
ttaaccttcagtcaagcaggtctggtatctgcatctgaggactgcaccatctgcatctgg
gatatcaccaattgggcaatcctccgaagattcgaccataacaaaggggctgtaactaat
ctggcagtgattccacagtcctcattgctttctgtgtcaaaccatcggagagtttctaat
gcatttggtgtttcttcgctcgacaagtatccacagcctcccaactcatccaaggagaaa
atccctcttctttcgtcatgccacttcctcaaaggaaaccacaccactcattctggccaa
caaatatatgacacagaggaagaattcagtcctgcagcaatgcaaatgaagttggaaaca
atcctagagcaccggatgtgggcaacaagaatggcaaaacatgtgatggagatgaacacg
catttgcagacacatttgttagacttgatgcagagcggattgttgcggtccacgtctact
gaaattgattcacctccaacaaaaaagagagagactcgcatgtttgatgagagtccccca
tttcagggagagaagcaaccataa

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