Prunus mume (Japanese apricot): 103338169
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Entry
103338169 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103338169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103338169
03009 Ribosome biogenesis [BR:
pmum03009
]
103338169
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103338169
Spliceosome [BR:
pmum03041
]
Complex A
U1 snRNP components
U1 related factors
103338169
Complex B
103338169
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
Helicases
103338169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103338169
NCBI-ProteinID:
XP_008239580
LinkDB
All DBs
Position
LG7:complement(11814139..11818678)
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AA seq
609 aa
AA seq
DB search
MYAYDNRYTDVNSYRERRSDLMGPAPAVAPPAGPAYGRGGGGGFSGCPPFQPPSGRFNIG
RGGGNGSFGGRASNGHIGGGRGRGGGGRFGGGRDFDGGRGGGGRSSGFSRGGSGGRGFGG
RGGGRHGGSSGGDLDNIVLPKQDFRSLVPFEKNFYVESSSVRAMSEQEVMVYRNRREITV
EGHDIPKPIQMFEDANFPDYCLDAIAKLGFVEPTPIQAQGWPMALKGRDLVGIAETGSGK
TLSYLLPALVHISAQPRLVPGEGPIVLVLAPTRELAVQIQEESSKFGSRSNIRSTCIYGG
APKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRK
IVSQTRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSASLKANQSIKQVVEVVSDGE
KYNRLIKLLKEAIVGSRILIFVETKKGCDQVTKQLRMDGWPALSIHGDKNQAERDWVLAE
FKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGATGTALTFFT
HANAKFARELIKILQEAGQVVSPALAAMSRSSGSFGGSGGNFRNRGRGGGFGNRISGSNT
VPIGYKRPW
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcctacgacaacagatacaccgacgtcaactcctaccgtgagcgccgaagtgac
ctaatgggtccagcgcctgcggtggctccgccagcgggccccgcctatggccgtggcggt
ggggggggctttagtggctgcccgccgttccagcccccttcgggtcggttcaatattggg
cgaggtggtggtaatgggagttttggtggcagagcctccaatggtcatattggtggtggg
aggggccgtggcggtggtggtaggtttggtggtggtagggattttgatggaggccgtggc
ggtggcggtaggagctctggttttagccgcggtggaagcggtgggcgtggatttggtgga
agaggaggaggtagacatggtgggtcatcaggaggagacttggataacattgtgcttccc
aagcaagattttaggagcttggtaccttttgagaagaatttctatgttgagagctcttcg
gtgagggcaatgtcagagcaggaggttatggtgtatcgcaacaggcgggagattaccgtc
gaagggcatgatatcccaaagccgattcagatgtttgaggatgcgaatttccctgattac
tgccttgatgctattgcaaaattgggttttgttgaaccaacaccaattcaggctcaagga
tggccaatggcattaaagggtagagatttagttggaattgccgagactggttctggtaag
actttgtcctatctgctcccagctttggtgcatattagcgcacagcctcggttagtgcca
ggtgaaggtcctattgtgctagtattagcacctactcgagaattggcagttcaaattcaa
gaagaatcttcaaaatttggctcacgttctaatattaggagtacttgcatttatggtggt
gctccaaaaggaccccagatacgggatcttaaaagaggggttgagattgtcatagctaca
cctggccgactgatagatatgttggaagcacagcacacaaatttgcgaagagtgacctac
ctagttttggatgaggctgacaggatgttggacatggggtttgagcctcagataaggaaa
attgtatcacaaacccgaccagatcggcagacattgtattggagtgccacatggccaagg
gaggttgaaactttagcaaggcagtttttacgtaacccatataaggtaatcattggatca
gcaagtcttaaagcaaatcaatctataaaacaagttgttgaagttgtgtcagatggggag
aaatataataggctgatcaaactgctcaaagaagcaattgttgggagccgaattttgata
tttgtcgagacaaaaaagggatgtgaccaagttactaagcaattgaggatggatggatgg
ccagctctatccattcacggtgataaaaaccaggccgaaagggactgggtcttggctgag
tttaaaagtggaaggaatcctataatgactgccactgatgtggctgcgcggggtcttgat
gtgaaggacataaaatgtgtgatcaattatgattttccatcaagcctagaggattatgtc
cacagaattggacgaaccggtcgtgcaggggcaacaggaactgctttaacctttttcaca
cacgcgaatgcgaaatttgctagggaactaatcaagatcctgcaagaagcaggtcaggtg
gttagccccgcattggctgcaatgtcgcggtcaagtggtagttttggaggctctggaggg
aacttccgcaatagagggcgaggaggaggatttgggaatcggatttcgggttcaaatact
gttcctattggttacaagaggccatggtag
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