Prunus mume (Japanese apricot): 103338743
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Entry
103338743 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103338743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103338743
03012 Translation factors [BR:
pmum03012
]
103338743
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103338743
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103338743
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103338743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
ATPase
Dicer_dimer
AAA_30
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
103338743
NCBI-ProteinID:
XP_008240202
LinkDB
All DBs
Position
LG7:complement(16153567..16163075)
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AA seq
1231 aa
AA seq
DB search
MPYSALFEGYIIRTTAMSLKPTTASSPILASLRRTHNHRRHHHIASVRRSFFGCTMRNSR
YHTHCLARSQNWNACYYLPRHVGPVGEVTCLASSRAVEADWKQRQLRSTAVPFLYQQNLG
YGRFAYQDASASEDSDYERGSSQRQSGGSTLENIDEWRWKLTMHLRNKDEQEVVSRERKD
RRDFEHLSELANRMGLYSRQYSKVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVDA
HLKAYVSQKPMKTGNLSEFSFSRSSSSGSMVNDGGPYEQEEPSIQNSDAMEKILLRKSLQ
LRNRQQHWQESPEGQKMLELRRSLPAYKEKDALLKAISENQVIVVSGETGCGKTTQLPQY
ILESEIEAARGTACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGVKGRDTR
LLFCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS
ATLNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTRYQLNEYNQIDDYGQEKAWKM
QKQAPGFKKRKSQIASTVEEVLEAADFREYSPRTRESLFCWNPDSIGFNLIEHLLCHIVR
KERPGAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMPSSEQRLIFDKPEDE
IRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRA
GRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQAPE
PLSVQNAVEYLKIIGALDDNEDLTVLGRHLSMLPVEPKLGKMLILGAIFNCLDPVMTVVA
GLSMRDPFLMPFDKKDLAESAKAQFSARDNSDHLALVRAYDGWKNAERVHSGYEYCWRNF
LSAQTLKSIDSLRKQFFFLLKDTGLVDHHTETCNTWSHDEHLVRAVICAGLFPGICSVVN
KEKSIALKTMEDGQVMLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLL
FGGNISRGGLDGHLKMLGGYLEFFMNPALANTYIFLKGELGELIHNKLLNPKLDMQSHTH
LLSALRLLVSEDQCEGRFVFGRKVPVPSKKATKDIKPGALTVGDKGGPNNNSKNQLQTLL
VRAGHDAPTYKTKQLKNNQFCSTVIFNGLNFVGQPCNSKKQAEKDAAAEAVLWLKGERHS
SSTDIDHMSMLLKKSKKTSQKRTSFDSAKWG
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcagccctctttgagggctatataataagaacaaccgccatgtctctcaaa
ccgaccaccgcctcatcccccattttggcctctttgcgtaggacccacaaccaccgccgc
caccaccacatagcttcagtaaggcggtcttttttcggttgcaccatgaggaacagccgt
taccacacccactgccttgcccggtcgcagaattggaatgcgtgttattatctgccgcgt
cacgtggggccagtgggggaagtcacatgcctggcctcgtcgcgggccgtggaggctgat
tggaagcagaggcagctgaggagtacggcggtgccctttttgtaccagcagaacttgggt
tatggacggtttgcataccaagacgcctccgctagtgaggattccgactacgaaaggggt
tcttctcagcgccaatcgggtggttcgacccttgaaaacattgatgaatggagatggaag
ttaaccatgcatcttcgcaacaaagatgagcaagaagtggtgtccagggaaagaaaggac
agacgtgattttgagcatctttcagaactggcaaataggatgggtttatatagccgtcag
tattcaaaagttgtagtctttagtaaagtccctcagccaaattacagacctgatctggat
gataagcgaccacaaagagaggttgtcttaccttttggactgcatagagaagtagatgct
catctcaaagcctatgtatctcaaaagccaatgaagacaggaaatttatcagaattttcc
ttttcaagatcaagcagtagtggaagtatggttaatgatggaggaccttatgagcaggag
gagccctcaatacagaatagtgatgccatggagaaaattcttctgcggaaaagcttgcaa
ctgcgtaataggcaacaacattggcaggaatctcctgaaggtcaaaagatgcttgaactt
cgtagaagcctgcctgcatataaggaaaaagatgcactgttaaaagccatatcagaaaat
caggtcatagttgtctcaggtgaaacaggttgtggtaaaactacacagcttcctcagtac
attttagaatctgagattgaagctgctcgaggaactgcctgcagtattatttgtactcag
cctagacgaatatctgccatggctgtttctgaaagagttgctgcagagcgaggggagaaa
ctaggggaatctgttggttacaaagttaggctggaaggggtgaaggggagggacacccgc
cttcttttttgcaccactggaatattattgaggcgattacttgtcgacagaaagttgaga
ggtgttacacatgttattgttgacgagattcatgaacgtggaatgaatgaagattttctt
cttattgtcctgaaagaacttctccctcgtcgaccagagttgaggttgattttgatgagt
gcaaccctaaatgctgagcttttctcttcctactttggtggtgctccaatgattcatatt
cctggttttacgtatccagtccgagcacattttctggagaatattctggaaatgaccagg
tatcagttgaatgaatacaatcaaattgatgattatggtcaagagaaggcatggaaaatg
cagaaacaagctccaggtttcaaaaagaggaagagccaaattgcttctacagttgaggag
gtacttgaagctgctgattttagggagtacagtccgaggactcgagagtctctcttctgt
tggaatcctgattccattggtttcaacctcattgagcatctgctttgccacatagtcagg
aaagaacggcctggtgctattttggtttttatgactggttgggatgacattaactccttg
aaggatcaactccaatctcatcccctattaggagatcctagcagggtcctactgcttgca
tgtcatggttctatgcctagctctgagcagaggttaatatttgataagccagaagatgaa
attcggaaaatagttctagcgacaaacatggctgagactagtatcactatcaatgatgtt
gtttttgtggttgattgtggaaaggcgaaagagacatcatatgatgcactaaataacact
ccctgtttgcttccatcctggatttcaaaggctgcttctcggcaaagaagaggcagagct
ggtcgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatacgatgccttt
gctgattatcagttacctgaacttttgaggacgccattgcagtctttatgtttacaaatc
aaaagtctgcaacttggaagtatttcagagttcctatctaaggccttacaggcgccagaa
cctctatcggttcaaaatgctgttgagtatttgaagattattggggccttagatgataac
gaagatctgacagtgttaggacgccacctgtcgatgcttcccgttgagcctaaacttgga
aaaatgctcatattaggggctatcttcaactgtctggatccagtaatgactgttgttgca
ggccttagtatgagagatccattcctgatgccatttgacaaaaaggatcttgcagaatca
gcaaaagcacagttctctgcccgtgataacagtgatcatcttgctcttgtccgagcttat
gatggttggaaaaatgctgaaagagtgcattctggttatgagtactgctggaggaatttt
ctttccgcacaaactctaaaatccattgactctcttcggaagcagttcttctttttgctc
aaggatactggtctggttgatcatcatacagaaacttgtaatacatggagccatgatgaa
caccttgtccgagcggtcatctgtgccggattatttcctggaatatgctctgttgtgaac
aaagagaagtcaattgcgctgaaaacaatggaagatggacaagtaatgctatactcgaat
tctgtcaatgccggggtacccaaaattccatacccatggctagttttcaacgaaaaggtg
aaagtgaattcggtatttctccgggattcaactggtgtatctgattctgtacttcttttg
tttggaggcaacatctccaggggcgggctggatgggcacctgaagatgttgggaggatat
ttggagtttttcatgaatcctgcattagcaaatacatatatttttttaaagggggagctt
ggcgaactgattcataacaagctcctcaatcccaaattggatatgcagtcccatactcac
ctcctatcagcgctaagattactggtctcagaggaccaatgtgagggtagatttgtcttt
ggtcgtaaggtgccagtaccctcaaagaaggcaacaaaagatattaaacctggcgccttg
acagttggtgataaaggtgggcctaataataattccaaaaatcagctgcaaactttgctt
gtcagagccggacatgatgcacccacctacaagacaaaacaattgaaaaacaaccagttc
tgttctacagtgatcttcaatgggttgaactttgtagggcagccttgcaatagtaagaaa
caagcagagaaggatgcagctgctgaggctgtgctttggttaaagggtgagaggcattca
tcttccacagatattgaccatatgtcaatgcttctaaagaagagtaaaaagacaagccag
aaaaggacttcatttgatagtgctaagtggggttaa
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