Prunus mume (Japanese apricot): 103338875
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Entry
103338875 CDS
T03196
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103338875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103338875
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103338875
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103338875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
LCE6A
Motif
Other DBs
NCBI-GeneID:
103338875
NCBI-ProteinID:
XP_008240361
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All DBs
Position
LG7:complement(16696092..16704717)
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AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWINNVVGELESQIDSFEAEIEGLSFRKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYNTLPLDKVES
LEDLVTIVPPGLVKGAPVLGLKTSLAVSASPMPAAATSTTQQSTSVQEPVEDTVSQDSNV
DNIPRTPPPKSSALASSPASTPVGGHASPLSVSVSSHNLPGAPSVSAVPGSIAVRGVTEN
AGASNSSSPVSLSASVKEEELASFPGRRPSPSLSDAGLVRGIGRGGLSAQIPSSIPLSSS
NVAPSNSTLSAAPSVSDVTKRNILGADERIGSSSVAQPLVSPLSNRLILPQAAKASDGSI
PVDSGNAGEAAAIPGRAFSPSMVSSMQWRPGSSFQNQNEAGLFRGRTEIAPDQREKFLQR
LQQVQQGHSTILGMPPLAGGNHKQFSGQQQNPLLQQFNSPNSSVSSQAGLGLGVQAPGLG
TVAPTTLQQQLNSIHQQSNQQALMSSGPKEADVGHPKVEDQQQQQNAPDDSTADSTPVSG
LVKNLINEDDLKASYAIDSLAGVSGSLTEPAQVPRDIDLSPGQPLQPNQPSSSLGVIGRR
SVSDLGAIGDNLSGSTPNSGGTHDQLYNLQMLEAAYYKLPQPKDSERARSYTPRHPAITP
PSYPQAQAPIVNNPAFWERLGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK
YNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcgaaaacttcagggcgagatcgaccgcgttctcaagaaggtccaagaa
ggcgtggatgtcttcgatagcatatggaacaaggtttatgatacggacaatgcgaaccag
aaggaaaagtttgaggcggacctaaagaaggagattaagaagctccagaggtacagggac
caaatcaagacttggattcaatccagtgaaatcaaggataagaaggtcagtgcctcttat
gagcaggctctggtggatgctcgcaagcttatcgagcgtgaaatggaaaggtttaagatt
tgtgaaaaggagaccaaaacaaaagcattttctaaagaaggcttgggccaacaacctaaa
accgatccgagggagaaggccaagtctgagacaagggattggataaacaatgtggttggg
gagttggaatctcagattgacagctttgaagctgagattgaaggcctatctttcaggaaa
gggaagggcagaccacccagactgacccatctagagacatctattactcggcataaggct
cacataatgaagttagaactgatcctgaggctattggataatgatgaactgagtcctgag
caggtcaatgatgtcaaagacttcttggaagactatgttgaacgcaatcaggaggatttt
gatgaatttagtgaagttgatgagctttacaacaccttaccattggacaaagtggagtcg
cttgaagatctggttactatcgtccctcctggtcttgtcaagggtgcaccggtgcttggc
ttgaagacttctttggcagtatccgcatctccaatgcctgccgcagctacttccactact
cagcagagtacttctgtacaagagccagttgaagatacagtttcccaggacagtaatgtt
gataatattcctaggactccacctcctaaaagtagtgcacttgcttcttctcctgcatca
acaccagttgggggtcatgcaagtcctctctctgtgagtgtttcatctcacaatctgcct
ggtgcgccaagtgtttcagccgttccaggttcaattgctgttcgtggtgtcacagagaat
gcaggagcttctaattcttcatctcctgtaagtctgtccgcttctgtgaaggaagaagaa
ttagcaagcttcccaggccgtagaccatcgccatctctttctgatgctgggcttgtgagg
ggcattggtagaggtggcctctctgcacagattccatctagtatccctcttagttctagc
aatgtagctcctagtaatagtacccttagtgcagctccttcggtttctgatgtgacaaag
agaaatatattgggagctgatgagagaattgggagtagtagcgtagcgcagcctcttgtt
tcccctctaagtaacagattgatcttgcctcaagctgccaaggctagtgatggaagtatt
ccagttgattctggtaatgctggtgaggctgctgctattcctggcagagcattttctcct
tctatggtctctagcatgcaatggaggcctggaagttccttccaaaaccagaacgaagcg
gggttgtttcgtggaagaactgaaatagcacctgatcagagggagaaatttttgcagcgg
ctccaacaagtgcagcaaggtcacagtaccattctcggcatgcctcctcttgctggtgga
aatcataagcaattttctggacagcagcaaaatccactcttacaacagtttaattctccg
aactcatctgtatcttctcaagctggccttggactaggggtacaagccccaggtcttggt
actgttgcacctaccaccttacagcagcagctaaattctatccatcaacaatctaaccaa
caggcattgatgtcgagtggaccaaaagaagctgatgttggtcatccaaaagttgaggac
cagcagcaacaacaaaatgcacctgatgattcaactgcagactctactccggtttctggg
cttgtaaagaatctaattaatgaggatgatttgaaagcctcatatgcaattgattctttg
gctggagtttctggctctttgacagagcctgctcaagtaccacgagatatcgatctctct
cctgggcaacctttacagcccaatcaaccttctagtagtcttggtgttattggccgaaga
agtgtttctgaccttggtgcaattggtgataacctatctggatcaactcctaattctggg
ggaacgcatgatcagttgtataatttgcagatgcttgaggctgcttattacaaacttcca
caacccaaagactcggaacgtgcaaggagctacactccaaggcaccctgcaataactcct
cctagctacccccaagcacaagcacctattgttaacaatcctgccttctgggaacgtttg
ggtcttgaaccatacggcactgataccctgttctttgcattttactatcagcagaacact
tatcagcaatatttggcggccaaagagttgaagaagcaatcttggagataccacaggaaa
tataacacttggtttcaacgacacgaggagccaaaagttgccactgatgaatatgaacag
gggacatatgtgtactttgacttccatatcgcaaatgatgatctacaacatggatggtgt
caaaggatcaaaaccgagtttacttttgaatataactatcttgaagatgaacttatcgtt
tag
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