Prunus mume (Japanese apricot): 103338897
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Entry
103338897 CDS
T03196
Name
(RefSeq) protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103338897
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103338897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
Motif
Other DBs
NCBI-GeneID:
103338897
NCBI-ProteinID:
XP_008240390
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All DBs
Position
LG7:complement(16822382..16829421)
Genome browser
AA seq
1164 aa
AA seq
DB search
MEEKDEQPSESEAAAAAAAKTSLFPVLPVSQQITSVPHWLSNTSFTTQLSVINDAVISHF
KPDPLPSPPPPQEHEEEEVPSQAKPYEMLESSSGSDRSDERDRTTKKKKHKKRKNKRRRE
RSVERGRGAFADYGSRKSSVRAWADSETKPSKDYFLDSHGDPDNLVFGCLYRMDVARYKP
FAEVSGSDFQGLYRWNQTGTTLDRDADVDALDGKLKSAGRYWSAKYMALERHTNLKRARI
LVPRDLAVTVSGDFIPLTDGRSSNEGVDGDDSLSRTSVVEESWEDEVIRKTREFNKLTRE
QPHDEKVWLAFAEFQDRIADMQPQKGARLQTLEKKISILEKAAELNPDNEDLLLSLLKAY
QSRDSSDVLISRWERILIQHSGSYKLWREFLRVFQGEFSRFKVSDMRKMYAHAIQALSAA
CRKHFRQVCQAEDSPPDLATVQLELGLVDIFISFCRFEWQAGYQELATALFQAEIEFSLF
CPSLLLTEQSKQILFEHFWNSDGARVGEEGALGWSTWLEKEEENRQRVIQEETAHDNEGG
WTGWSEPLTKNKENSLKTEKESESNVLVEEFQEEFEEEDVKKEEDTEALLKMLGIDVDVG
TSGEIKDTSTWIKWSEEELSRDCVQWMPVHARAAISHNVGTPDGEADEHLSRVIMFEDVN
EYLFSLSSSEARLSLVLQFIDFFGGKTSQWISTNSSTWAEKVLSFEALPDSMLQTLRRVH
NFLSKTQGSSSNVSLESLLGTSIDIYRRTDLMKFLRNATLLCLSVFPRNFVLEDAALVAE
ELSVMNSNPSSCSVTPCRALAKFLLKSDRQDVLLCGVYARREAFHGNIDHARRVFDMALS
SIEGLPLELRSNASLLYFWYAETELGNNNGSGCASSFRAMHILFCLGSGVTYSPYKSQPS
NLQLLRARQGFKERIRTVQMAWVRGVIDDQSVALISSAALFEELTSGWAAGIEVLDQAFS
MVLPERKSRSYQLEFMFNFYMKMLWRHRGQSSLSKCWESILQGLQIFPFSPELLNDLIEV
GHLYTTANKLRWVFDDCCQKKPSVVVWLFALSFEMSKGGSQHRIRGLFERALASDRFHNS
VVLWRCYIAYEMKVVCNPSAARRNFFRAIHACPWSKKLWLDGFLKLNSTLSAKELSDLQE
VMRDKELNLRTDIYEILLQDELVL
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggacgaacaaccatcagaatcagaagcagcagcagcggcagcagcaaaa
acctcactcttccctgtactacccgtctctcaacaaatcacaagcgtccctcactggctt
tccaataccagcttcaccacccaactctccgtcataaacgacgccgttatctcacacttc
aaacctgacccgcttccgtcaccaccaccaccgcaagaacatgaagaggaggaggtgccg
tcccaagcaaagccatacgagatgctggaatcttcttctggatccgatagaagcgatgag
agagacaggacgacaaagaagaaaaagcataagaagaggaagaacaagaggaggagagag
aggtccgttgagagaggccgtggagcattcgccgattacgggtctagaaagtccagcgtt
cgggcttgggccgactccgagactaaaccttccaaagattatttccttgattctcatggc
gaccccgacaatttggtgtttggatgtctctacagaatggacgttgctcgctacaagcct
tttgcggaggtatctgggagtgattttcaaggtttgtatcggtggaaccagacaggtaca
acactggatagagatgccgatgttgatgcattggatggtaaactaaaatctgctggtcgc
tattggtctgcaaagtacatggctttggaacgccatacgaacttaaagcgtgctcgcata
cttgtccccagagaccttgcggttacagtttccggtgattttattcctttaacggatggt
cgatcatccaatgaaggtgttgatggcgatgattcactctcaagaacttcagtggttgaa
gaatcttgggaagatgaagtaatacgcaaaacacgggagtttaacaaattgacgagggag
caaccccatgatgaaaaggtttggttagcttttgcggaatttcaagacaggattgctgat
atgcaaccccagaaaggcgctcggttgcagacactggaaaaaaagattagcatactggag
aaggcggctgagcttaacccagataatgaagacctgttgctttctcttctaaaggcttac
caaagcagagacagttctgatgtgttaattagtagatgggaaaggatactcattcaacat
tcaggaagttacaagttgtggagagagtttttgcgtgtatttcaaggggagttctcaagg
ttcaaggtttcagacatgagaaaaatgtacgcacatgcaatccaggctttatctgctgca
tgcagaaagcactttaggcaggtttgccaagcagaagacagtcctccagatcttgctact
gttcaactagaacttggtctggttgatatatttatcagtttctgtaggtttgaatggcag
gctggctatcaagagttggccactgctttatttcaggctgaaattgaattcagtttgttt
tgtccttcattactcctcactgagcagagtaaacagatactgtttgagcacttttggaat
agtgatggtgcaagagttggagaagaaggtgctcttggttggtccacatggttggaaaaa
gaggaagaaaataggcagagggttatccaagaggagactgcacatgataatgaaggtggc
tggacaggttggtcggaaccactaaccaaaaataaggaaaatagtttaaagacagaaaag
gaatccgaaagtaatgttctagttgaggagtttcaagaagaatttgaggaagaagatgtc
aagaaagaagaagatactgaagctttgctaaagatgctaggaattgatgttgatgttggt
actagtggtgagattaaagacacttcaacctggatcaaatggtcagaagaagagttatcg
agagattgtgttcaatggatgcctgttcatgcaagagctgctatctctcataatgttggt
acacccgatggagaagcagatgagcacctttcgagagtaataatgtttgaagatgtcaac
gagtacttattttccttgagctcatctgaggcccgtttatctctagtattgcaattcatt
gatttctttggtgggaaaacctctcagtggatatctacaaacagttcaacttgggctgag
aaagtccttagctttgaggcattgccagattctatgttacaaactttgagaagggttcat
aattttttaagcaaaacacaaggcagttcaagtaatgtcagcttggaatctctcttgggt
acctccattgacatctacagaagaacagacctgatgaaatttcttcgtaatgctaccttg
ctctgtttatctgtttttccacgtaattttgtcctagaagatgctgctttagttgccgaa
gagctatctgttatgaattcgaatccttccagctgttctgttaccccgtgtcgagctctc
gcaaagtttctcttaaagagtgaccgtcaggatgtattgctatgtggagtttatgcaaga
agggaggcttttcatggaaatattgatcatgcaagaagagtatttgacatggcattgtca
tctattgaagggcttcctttggaattacggtctaatgcttcccttctatatttctggtat
gctgagacggaacttggtaacaataatggcagtgggtgtgcatcatcatttcgtgcgatg
catattttattttgcttaggaagtggtgtaacatatagtccatataaaagtcaaccatca
aatttgcaattgctgagagcacgccaaggtttcaaagaaagaataaggacagtacaaatg
gcatgggtgcgaggtgttatagatgatcaatctgttgctctcatatcttctgcagcttta
ttcgaagagttaacctctggatgggctgctggtattgaagttctagatcaggctttttca
atggtgctcccggagagaaagagccgtagttatcaacttgaatttatgttcaacttttac
atgaagatgctttggagacatcgtggtcaatcaagtctatcaaaatgctgggagtccata
ttgcaggggcttcaaatatttccgttcagcccagaacttttaaatgatttaatcgaggtt
ggccatctttatacaacagctaataaactgcgatgggtgtttgatgactgctgtcagaag
aaaccgtctgtggttgtctggctttttgcgttgtcatttgagatgagtaaagggggatca
cagcataggatccgtggattgtttgaaagggcattggcaagtgataggtttcataactca
gttgttctttggcgctgctacattgcatatgagatgaaggtagtatgcaatccttcagca
gctaggcggaatttctttcgagctattcatgcctgcccatggtcaaaaaagctatggctt
gatgggtttctcaaattaaattctaccttgtctgcaaaagagctgtcagatctccaagaa
gttatgcgggataaggagctgaatctgagaacagacatatatgaaattcttttgcaagat
gagcttgtactttaa
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integrated database retrieval system
