KEGG   Prunus mume (Japanese apricot): 103338937
Entry
103338937         CDS       T03196                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03018  RNA degradation
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103338937
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103338937
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103338937
   03041 Spliceosome [BR:pmum03041]
    103338937
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103338937
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103338937
Spliceosome [BR:pmum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103338937
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 103338937
NCBI-ProteinID: XP_008240427
LinkDB
Position
LG7:complement(16984740..16987867)
AA seq 98 aa
MSSGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNISIVGELDADLDSTVDWSNMRAYPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtccagtggccctggtcttgagtcacttgttgatcaaacaatttcagttatcacaaat
gatggacggaatattgtgggagtcttgaaaggctttgaccaagctacgaatatcattctc
gatgaatctcatgaacgtgttttctctacaaaggaaggtgttcagcaactcgtgttgggg
ttgtatataatcagaggtgacaacataagcattgttggggaactagatgcagatcttgat
tctactgttgactggtcgaatatgagagcttatcccctcaagcctgtcatccactga

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