Prunus mume (Japanese apricot): 103339245
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Entry
103339245 CDS
T03196
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmum03036
]
103339245
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103339245
microRNA pathway
RISC loading complex
103339245
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
dsrm
Motif
Other DBs
NCBI-GeneID:
103339245
NCBI-ProteinID:
XP_008240740
UniProt:
A0ABM0PK25
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Position
LG8:complement(4602897..4607840)
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AA seq
804 aa
AA seq
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MEPINIEIDGTHQQSAAALLVEEATINIEIDGTQQQSAAALLVEEATQELASEPYDDQQP
SYVPPELVKPWCSNDASILYHCYLIQMKPNFCSDIPVNDIVLGMRSELDCDVANMNFDLG
VGKGTITVNFKKAAEIHLSSEQILQCRRFQITIFRILMDHNLQKLEEVLERLSVGQNLEV
ESIDYLLLPAARMHQKPFIIDWECVMSVPFRSEENSEYHVDSSPPNNCSRVLHTKNGIVC
TCRIQNSLVYTPHTGLLYCITGLLDDLNGNSLLRPRRRRARSYKTHYEQKHGIKLRFDQQ
LLLKGKHIFKVQNYLQSCRQQTEKDSSRISVELPPELCSIVMSPLSVSNLYSFSFVPSIM
HRLESLLLAVNLKRMVLDRCTENVTIPTIKVLEAITTKHCQENLHLESLEALGDSFLKYA
ASQQLFKTYQNDDEGDLTEKKEKIISNAALCKLGCDCKLPGFIRNECFDPKKWIIPGDYS
ESYFLNEKLRFNEKNIYIRGTRKVKGKRVADVVEALIGAFLSTGGEIAAIYFMNWVGIKV
DLAHIPYERHFQVQPEKLIDIRHLESLLNNYSFRDPSLLLEALTHGSYMLPQIPGCYERL
EFLGDAVLDYVITAHLYNKYPDMSPELLTDMRSASVNNVCYARTAVRAGLHKHILASDSV
LHTDIANTVNNFERLSMESTFGWESETSFSEVLADIIESLAGAIFVDSEYDKNAVFQSIR
PLLEPLVTPETMPLNPVKEFHDYCQKMQYIMKKPVKSIQNGVATRTIEVEANGVVKHTHT
STASNNDTAKRLACKEFLRLSKGN
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggagccaattaacattgagatagacggaacccatcaacaatctgctgctgctcttctt
gtggaagaagcgacaattaacattgagatagacggaacccaacaacaatctgctgctgct
cttcttgtggaagaagcgacacaagagcttgcaagtgagccttatgatgatcaacaaccc
agttatgtaccacctgagcttgtcaaaccttggtgttcaaatgatgctagtatattgtat
cattgctacttaattcagatgaagccgaatttttgttctgatattcctgttaatgatatc
gtacttggcatgaggagcgaacttgattgcgatgttgctaatatgaattttgatttggga
gttggcaagggtactataacagtaaactttaaaaaggccgcagagattcatcttagttca
gagcagattcttcaatgcagaaggttccaaatcacaatttttcgaattctaatggatcac
aatttgcaaaagttggaagaagttttagaaagacttagtgtgggacaaaatcttgaggtt
gaatcaattgattaccttttgctcccagcagcaagaatgcaccagaaacctttcatcatt
gattgggaatgtgttatgtctgtgccgtttagatctgaagaaaattctgagtatcacgta
gattcttctccacccaacaattgttctcgtgttctacataccaaaaatggtattgtttgt
acttgcaggatccagaattccttggtctatacccctcatactggtctcctgtattgcatc
actggtttgttggatgacttgaatgggaactcacttctgagacctaggcgcaggagagct
cgtagctacaagacgcactatgaacaaaagcatgggatcaagttgcgttttgatcagcag
ttattgctcaaggggaaacacattttcaaagtacaaaattatcttcagagttgcagacaa
cagacagaaaaagattcaagtcgtatatctgttgaattgccgcctgaactttgctctata
gtcatgtcgcctttatcagtcagcaatttatattcattctcctttgttccatccatcatg
catcgtcttgaatctttacttcttgctgtcaacttgaaaaggatggttttggatcgttgc
actgaaaatgttactattccaaccattaaggtcttggaagctattaccacaaaacattgc
caagagaacttgcatttggaatccttagaggctcttggagattcatttcttaagtatgct
gcaagtcagcagctttttaaaacctatcaaaatgatgatgagggcgatcttactgaaaag
aaggaaaaaataatttctaatgctgccctttgcaagcttggatgtgactgcaaacttccg
ggctttattcgtaacgagtgttttgatccgaaaaagtggattatacctggagattattct
gaaagttatttcttaaatgagaagttgcgttttaatgaaaaaaacatctacattagggga
acaaggaaggtaaaaggtaaaagggttgctgatgtagttgaggcactaattggtgcattt
cttagcacaggtggtgaaatagctgccatatatttcatgaattgggttggtataaaggtg
gatttagcccatataccatatgagaggcacttccaagtgcagccagagaagctcattgat
atcagacatttagaatccctgcttaacaactattcatttcgtgatccttctcttttactg
gaagcactaacccatggttcttacatgcttcctcagattccaggatgttatgagcggctt
gaatttcttggcgatgcagtgttggattatgttatcactgctcatttgtacaataagtat
ccagatatgtcaccagaacttttaactgatatgaggtctgcttctgtgaacaacgtttgt
tatgcacgaactgctgtgagagctggattacacaaacacattcttgcttcggacagtgtc
ctccacactgatattgccaacactgttaacaattttgagaggttatctatggaatcaact
tttggatgggaatctgagacatctttctctgaggtacttgcagatattattgagtctcta
gcaggggcaatttttgttgattctgaatatgataagaatgccgtatttcaaagtatacgc
ccccttttagagccgttggttactccagaaacgatgccgctcaatcctgtaaaagaattc
catgactattgccaaaaaatgcagtatattatgaagaaacctgtgaagtccatccaaaac
ggtgtggccaccaggacaatagaggttgaagcaaatggggtcgtcaaacacacacataca
tcaacggcttctaataacgatacagcaaaaagattagcttgcaaagaatttttgaggttg
tccaaaggaaactaa
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