KEGG   Prunus mume (Japanese apricot): 103339297
Entry
103339297         CDS       T03196                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103339297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmum03041]
    103339297
Spliceosome [BR:pmum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    103339297
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_EIPR1 PRP4 Beta-prop_IFT122_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR41 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_SCAP WD_LRWD1 WD40_like Tricorn_2nd Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WDR54
Other DBs
NCBI-GeneID: 103339297
NCBI-ProteinID: XP_008240787
UniProt: A0ABM0PK64
LinkDB
Position
LG8:complement(4918622..4922616)
AA seq 535 aa
MTMEEDKPSTTVAEPSVAAVPIAPVRPPVPRPPAPQNGEARASTSDSDSDSAGPPRATGV
SGAEYAISGESRGRRESRVVRERQEKAIQELLMKRRASALAVPTNDMAVRARLRRLGEPI
TLFGEREMERRDRLRMIMARLDSQGELEKLLKVHEEEEAAASAALEDGDDQMVQYPFYTE
GSKALMNARIDIAKYSIKRAASRLERARRKKDDPDEDMDAELDWALRQASSLELDCSEIG
DDRPLSGCSFSHDGKLLATCAISGVAKLWSMPEAKKFATLKGHTERLTDVQFSPVHTLVA
TASADRTAKLWNTEGSQLVTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETSEEL
LLQEGHSRSVYGIAFHPDGSLVASSGLDALARVWDLRTGRSILALEGHVKKVLALSFSAN
GYYLASGGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGYFLVTASYDLTTKIWS
ARDFKPVRTLSGHEAKVTSLDIAGDGHQIATVSHDRTIKLWSSSTNEKDQAMDVD
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgactatggaggaggataaaccttcaacaactgtagcagagccatctgttgcagcagtc
ccaattgctccagttcgacctcccgtaccgaggccgccggcgccacaaaatggtgaagcg
agggcgagtacgagcgactctgattccgattcggcgggccctccccgagccaccggcgtt
tcgggggccgaatacgcaatatcgggagagagcagagggaggagagagagcagagtggtg
agagagcgacaggagaaagcaattcaagaactgttgatgaagcgccgtgcttctgctctt
gctgttcccactaacgacatggctgtgagggctcgtcttcggcggctcggcgaacccatt
actctttttggagaaagagagatggagaggcgagacaggttgaggatgatcatggcaagg
cttgattcgcaaggcgagttggagaagttgttgaaagttcatgaggaggaggaggctgcc
gcttctgctgcattagaagatggtgatgatcaaatggttcagtaccctttttacactgaa
ggatccaaagctttgatgaatgcgagaattgacattgcaaagtactccattaagagggca
gcttcgcggcttgaacgggctcgaaggaagaaggatgacccagatgaggatatggatgca
gagttggactgggctttgaggcaggcatcaagtttggaacttgattgtagtgagattggg
gatgataggccactttctggttgttctttctcacatgatggaaaactgcttgccacttgt
gctataagtggagttgccaagttgtggagcatgcctgaagcaaagaagtttgccaccttg
aagggacacacagagcgcctgactgatgttcagttttctcctgttcataccctcgtagca
actgcttctgctgaccggactgcaaagttgtggaacactgaaggatctcagctggtgaca
tttaagggccatttggaccgtcttgcacgtattgccttccatccatcaggaaaatattta
ggtacaactagctttgacaagacatggaggctatgggatgtagaaactagtgaagagttg
cttcttcaggaaggtcacagtaggagtgtctacgggatagcattccaccctgacggatca
ttggtggcatcttctggactggatgcacttgctcgtgtttgggacctccgtacgggtaga
agtattcttgccttggaaggccatgtcaagaaagttctagcactcagtttctcagcaaat
ggctattatttagccagtgggggtgaagacaacacttgcaggatatgggatttaagaaaa
aagaaatccatatacatcattccagcacattccaatctcatatcacaggtcaaatttgag
cctcaagagggatatttcttagtaactgcttcgtatgatttgacaacaaagatatggtca
gcccgagattttaagcctgtgaggacgctctctggacatgaagcaaaagttacttctttg
gatattgcaggagatgggcatcaaattgctactgtatcacatgaccgaaccatcaaacta
tggtccagcagtaccaatgagaaggatcaggcaatggatgtagattag

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