KEGG   Prunus mume (Japanese apricot): 103339307
Entry
103339307         CDS       T03196                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03020  RNA polymerase
pmum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103339307
  09124 Replication and repair
   03420 Nucleotide excision repair
    103339307
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmum03021]
    103339307
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103339307
Transcription machinery [BR:pmum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     103339307
  RNA polymerase III system
   RNA polymerase III
     103339307
  RNA polymerase I system
   RNA polymerase I
     103339307
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103339307
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 tRNA-synt_1c
Other DBs
NCBI-GeneID: 103339307
NCBI-ProteinID: XP_008240797
LinkDB
Position
LG8:complement(5243100..5249972)
AA seq 228 aa
MEGDVEANGDANGEILGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLS
LQEFRALHGQNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLN
GLILITQNQITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKK
YNIEENQLPRLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCIW
NT seq 687 nt   +upstreamnt  +downstreamnt
atggaaggtgacgtagaggcgaatggcgatgccaacggggagattttagggccttgcttg
actggctatgtagacgacggtagcccagagagccacagatactacctgtcacgcagaacc
gtgctggagatgataagggacagaggctattctgttccaagctcagaaatcgacctctct
ctccaagaatttcgagcccttcacggccagaatccggatgttgagcgcctccgcttctcc
gctactcatcgcactgacccttctgacaggattatggtcatttactgcgggcctggtatc
gtgaaggttaatgtgattcgtgggctgcattctcagattgctaataaagacactttgaat
gggctcatattaattacccaaaaccaaataacaagccaagctctaaaaactatggaactt
tacccatttaaaactgaaatattccagattactgacttgcttgttaatatcacaaagcat
gtcttgaagccaaagcatcatgtactgaccgaacaagagaaacaaaaactcctaaagaag
tacaacatagaagaaaaccagcttccccgactgtcaagaaaagatgcgattgcacagtac
tatggacttgagaaggggcaggtagtgaaagttacctatactggtgatataaccgagtca
catgttacataccgttgcatctggtga

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