Prunus mume (Japanese apricot): 103340086
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Entry
103340086 CDS
T03196
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103340086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103340086
Membrane trafficking [BR:
pmum04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103340086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
TPR_MalT
AlaDh_PNT_N
TPR_19
zf-HC5HC2H_2
DUF2247
DUF2175
Motif
Other DBs
NCBI-GeneID:
103340086
NCBI-ProteinID:
XP_008241674
LinkDB
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Position
LG8:10886097..10891611
Genome browser
AA seq
1009 aa
AA seq
DB search
MVHSAYDSFELISDCPTKIEAIEAYGPKLLLGCSDGSLKIYAPDSSSSDRSPPSDYHAHK
LHQEPYALERNLSGFSKKPLVSMEVLESRELLLSLSESIAFHGLPNLGTIAVITKAKGAN
VYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICIGIRREY
MILNSTNGALSEVFPSGRLAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRVCWSEA
PNVVVIQKPYAIALLPRYVEVRSLRAPYPLIQTVVLRNARRILQSNNSVIVALDNAVYGL
FPVPLGAQIVQLTASGDFEEALALCKLLPPEEASLRAAKEGSIHMRYAHHLFDNGAYEDA
MEHFLASQVDITYVLSLYPSIVLPKTTMVSEPEKLMDISGDSSHLSRGSSGISDDMEPST
PLHLLESEESAALESKKMSHNTLMALIKFLQKKRYGIIEKATAEGTEEVVLDAVGNNFAS
YESNNRFKRSNKGRGSIPVTSGAREMAAILDTALLQALLLTGQASAALELLKGLNYCDVK
ICEEILQKNNHHAALLELYRCNSMHHEALKLLHQLVEDSKSNQVQTELIQKLKPESIVEY
LKPLCGTDPMLVLEYSMLVLESCPTQTIELFLNGNIPADLVNSYLKQHAPNMQATYLELM
LAMDENGISGNLQNEMVHIYLSEVLDWHADLSAQQKWDEQTYSSTRKKLLSALESISGYN
PEPLLRRLPTDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYESLVHQQS
SRSSGNIYLTLLQIYLNPRRTTKNFEKRITNLVSPQNIGTPKVGSANTVKSKGGRGNKKI
AAIEVADDIRVGQSSTDSSRSDGDADESSEEGGSTIMLDEVLDLLSRKWDRINGAQALKL
LPRETKLQNLLPFMGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELYEQRKGVVKITSDS
ACSLCRKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKTVGRGSPSPLRKL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggtacacagtgcctacgattcattcgagctcatcagcgactgccctacgaagatcgaa
gccatcgaagcgtacggtccgaagctcctcctcggctgctctgatggatctctcaaaatc
tacgctccggactcctccagttccgaccgttctccgccgtccgattaccacgcgcacaag
ctgcatcaggaaccgtacgcactggagagaaacttgtccggtttttcgaagaagcctttg
gtctccatggaggtcctggaatcaagagagctccttctatcgctgtctgagtcaatagcg
tttcatggcctcccgaacttgggcaccatagcggtgatcacaaaggcgaagggcgccaat
gtctactcctgggatgaccgcagaggcttcttgtgcttcgcgaggcagaagcgggtctgt
attttcagacatgacggaggacgagggtttgtggaagtgaaagagtttggggttccagat
gtggtgaagtcgatgtcgtggtgcggtgaaaatatatgtatagggattagaagagaatac
atgatactgaattctactaatggtgcattgtctgaggtgtttccttcggggagattggca
ccgccattggtggtctctcttccttctggggagcttcttcttggaaaggataacattggg
gtttttgtggaccaaaatgggaagcttcttcaagaaggcagggtttgttggtcagaggct
cctaatgttgttgttattcagaagccatatgcaatagctctcttaccaagatatgttgag
gttcgatcacttcgagctccatatccattgatacagactgtagttcttcggaatgctcgt
cgtattctccagagcaacaattctgtaattgttgcattagataatgctgtttatggtctc
ttccccgttcctcttggtgctcagattgtgcaattaacagcatctggtgattttgaggaa
gcgttggcattgtgcaagctgcttccgccagaagaagcaagtcttagagctgcaaaggag
gggtcaattcacatgagatatgctcatcatctttttgataatggggcctatgaggacgct
atggagcattttttggcatctcaagtagatataacctatgtactttctttgtatccatct
attgttcttcctaagacaactatggtttcggagccagagaagctgatggatatttctggg
gattcctcacatctctcaagaggttcatctggtatatcagatgatatggaaccctctacc
cctttgcatctgctggaatctgaagagagtgcagcattagagtccaagaaaatgagccat
aacactctcatggctctgataaagttcttacagaaaaaaagatatggcataattgaaaag
gctactgctgaggggacagaagaggttgttttagatgcagtaggaaacaactttgcatcc
tatgagtctaataataggtttaagagatcgaacaaggggcggggcagcatcccagttacc
tccggtgctagggagatggctgcaatactggatacagcactactccaagctctactcctt
actggacaggcttcagcggctttagaattactgaaaggtcttaactactgtgatgtaaaa
atatgcgaggagattctccagaaaaacaatcaccacgctgccttgttagaactctacagg
tgcaattcaatgcaccatgaagctctaaaacttttgcatcaattagtagaagattcaaaa
tctaaccaagtgcaaactgaattgatccaaaagttaaagcctgagtcaattgttgaatat
ctcaagcctctttgtgggactgatcccatgcttgtcctggagtattcaatgcttgttctg
gaaagttgtccaacacagacaattgagctctttttgaatggaaatattccagcagacctg
gtcaactcttatttgaagcagcatgctcccaacatgcaggccacatacttggagcttatg
cttgcaatggatgaaaatgggatctccggaaatctgcaaaatgaaatggtacatatctat
ctatcagaagttcttgattggcatgctgatttaagtgctcagcagaaatgggatgagcaa
acttactcctcaacaagaaaaaaattattgtctgctttagagagtatttcaggatataac
ccagagcctttgttgagacgtcttccaacagatgctttatatgaagagcgtgcaattttg
ttgggaaaaatgaaccaacatgagcttgccttatctctatatgttcataagcttcatgtt
cctgagctggcactgtcctattgtgatcgagtgtatgagtcattggttcatcagcaatct
tcaagatcttctggcaatatatacctcactctattgcaaatttatcttaatccgaggaga
acaaccaagaactttgagaagcgaattacaaatttagtatcacctcagaatatcggtaca
ccaaaggttggttctgcaaatacagttaaaagtaaaggaggtcgtggaaataagaaaatt
gctgcaatagaggtggcagatgacataagagtcggtcaaagtagcactgacagtagcagg
agtgatggagatgcagacgaatctagtgaggaaggaggttcaacaatcatgcttgatgag
gtcctggatttgttaagccgaaagtgggacagaataaatggagctcaggcgctcaaactt
ttgccaagggaaactaagctgcagaatttgcttccatttatgggacccctgttgagaaaa
tccagtgaggcatacaggaacctttcagtgatcaagagtttgagacaaagtgagaacctg
caggtcaaagatgaactctatgaacaaaggaaaggggtggtgaagatcacaagtgatagc
gcgtgctccctttgcaggaagaaaataggaacaagtgtctttgcagtgtatccgaatgga
aaaacaatagtacattttgtctgcttcagagactcacaaagcatgaaaaccgtgggcaga
ggatcgccttccccgctaaggaagctatga
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