Prunus mume (Japanese apricot): 103340209
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Entry
103340209 CDS
T03196
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103340209
Enzymes [BR:
pmum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
103340209
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
103340209
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
103340209
NCBI-ProteinID:
XP_008241824
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Position
LG8:11596497..11600654
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AA seq
607 aa
AA seq
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MKIVTYNVNGLRPRIAQFGSLLKLLNSLDADIICVQETKLRRQELTADLVMAEGYESFFS
CTRTSEKGRTGYSGVATFCRVKSAFSSDEVALPVAAEEGFTGLLEIGKGEMAAAAEGLEE
FSKDELLKVDGEGRCIITDHGHFVLFNLYGPRAVCDDTERIEFKLKFFKILQKRWESLLF
QGRRIFVVGDLNIAPTSLDRCGAEPEFENNQFRRWFRSMLVENKGSFFDVFRAKHPNRRE
AYTCWPQNTGAEEFNYGSRIDHILCAGSCLHQEQDLQSHNFVTCHVKECDILTQYKRWKP
GNSLRWKGGQSIKLEGSDHAPVYTNLLEIPSVFQHSTPSLSARYIPMVRGLQQTLVSVLM
KRQTAEQVNSDGDIIKESCSERERSSSDHCSTPGVPSGNSCSSSSQNFEVLSSKTNEHSN
GFPMEDTCNTLVTLGGQRTKTMCGSEPKKKAKRSSQLSLRSFFQKSSIPSNGVGNGTDTS
INQIDVPDSNHLSNETPIPENQSGSPKQCELNSSASIEDQDEVDVCSLEKEKNNFALMEW
QRLQQVMQNSIPLCKGHREPCVARVVRKRGANFGRRFYVCARAEGPASNPEANCNYFKWA
ASKPRQK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagtgacgtacaacgtgaatgggctgaggccacgcattgcgcaatttggctct
cttctcaaattgctaaattcgctggacgcagatatcatttgtgttcaggaaaccaaactg
agaagacaagaattgaccgccgacttggtcatggccgagggctacgagtccttcttctcc
tgcactcgtacctccgagaaaggccgaactggatactccggtgtggctacgttttgccgc
gtaaaatcggcattctcgagtgacgaagtagcgttgccggtggcggcagaggaaggcttc
actgggctccttgagattggaaaaggagaaatggctgcggctgcagaagggctggaggag
ttttcgaaggatgagcttcttaaggttgatggcgagggacggtgtattatcacagatcat
ggtcattttgttctcttcaatttgtatgggcctcgagctgtatgtgatgacacagaaagg
attgagtttaagctcaagtttttcaagattttacagaaaaggtgggagtctctcctgttt
caggggaggaggatatttgttgttggtgatcttaacattgcacccacctctttagatcgt
tgtggtgcagaaccagaatttgagaacaaccaatttagaagatggtttagatctatgttg
gtggaaaataaaggctcattctttgatgttttcagagcaaagcatcctaatagaagagaa
gcgtacacatgctggccacaaaatacaggtgctgaagaatttaactatggctctagaatc
gaccacattctttgtgcaggatcatgcttacaccaagagcaggacctgcaaagccataat
tttgtaacttgccatgtcaaggagtgtgacatattgacacagtataaacggtggaaacca
ggaaattcactgaggtggaagggagggcagagtattaaacttgaaggctctgatcatgct
cctgtttacacaaatttgctggaaattcctagtgtcttccagcatagcaccccatcttta
tctgctaggtacattccaatggttcgtggactccagcaaaccttggtatcagtgttaatg
aaaagacaaactgctgaacaagttaattcagatggagatatcattaaagagagttgcagt
gagagagaaagaagctcgtctgaccactgtagcacacctggtgtacccagtggaaactca
tgttcttcttcgagccaaaactttgaagttctcagttcaaaaacaaatgagcattccaac
ggttttcctatggaggatacttgtaacaccttggtgactttaggtggtcaacgtaccaaa
acaatgtgcggcagtgaaccaaagaaaaaggcaaaaaggagctctcaactctcattgagg
tcatttttccagaaaagttcaatccctagcaatggtgtcggcaatggtactgatacttca
attaatcagatagatgttccagattctaatcatctgtcaaatgaaactccaataccagag
aatcaaagtggcagtcccaagcagtgtgaattgaactcaagtgcatcaattgaggatcag
gatgaagtagatgtctgttctttggagaaagagaagaataattttgctctaatggagtgg
caaaggttgcagcaagtcatgcagaatagcataccactttgcaagggccatagggaaccc
tgtgttgctcgggttgtgaggaagcgaggtgctaattttggacgcaggttttatgtctgt
gctcgtgctgaggggcctgcatctaaccctgaagcaaattgtaattatttcaaatgggct
gcttcaaaacctcgacaaaaatga
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