Prunus mume (Japanese apricot): 103340300
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Entry
103340300 CDS
T03196
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmum04121
]
103340300
Enzymes [BR:
pmum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103340300
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103340300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-C3HC4
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf_RING_Vps8
zf-RING_16
zf-RING_4
PHD
Herpes_ORF11
ECSCR
HTH_63
Prok-RING_4
OppC_N
Motif
Other DBs
NCBI-GeneID:
103340300
NCBI-ProteinID:
XP_016651637
LinkDB
All DBs
Position
LG8:11676720..11679905
Genome browser
AA seq
291 aa
AA seq
DB search
MRQAFLGLCLLVFAHLVQLTSAIVVLKPFAREFSDLPAKFAIAVNSSGICGALLISDPLD
ACSSLRNGLRPNETDKTRFALIVRGECAFKDKVQNAQNAGFRGAIVYDDRDKGKLVYMMI
ESVNITIHAVFVSKASGEVLKEHALGEEGECCIFPFQNETAWTVLAISFISFLVILGILI
IAIFAPRHWLYSQGRNQLPKSVDTKIVEALPCFTFSSTSLGECHSEDTCAICLENYKDEE
ILKVLPCQHEFHSSCVDSWLTKWGTFCPVCKHDIRTKIVNPEIKRRTWLYS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaagcttttctgggattatgtttgcttgtttttgctcaccttgtccaactaacc
tcagctattgtcgttctcaaaccatttgccagggagttctcggaccttcccgccaagttt
gctattgctgtcaatagctctggtatatgtggagctttgcttatatcagaccctttggac
gcctgctcatctctacgcaatggacttcgaccaaacgaaactgataaaacaaggtttgct
ctgatagttagaggtgaatgtgctttcaaggataaagtccaaaatgctcaaaatgccgga
tttcgtggtgctattgtttatgacgatagagataaaggcaaattggtctacatgatgata
gagagtgtaaatattacaattcatgctgtatttgtttcgaaagcatctggtgaagtgtta
aaggagcatgctttaggggaagaaggggaatgctgcatcttcccatttcaaaatgaaaca
gcttggacagttctagctatatcttttatctcatttcttgtcatattgggtatacttata
atagccatctttgctccgagacactggctttattctcaaggaagaaaccagcttcctaaa
agtgtggataccaagattgtggaagctctaccttgcttcacattcagttccactagtttg
ggtgaatgccacagtgaagatacttgtgccatctgccttgagaattacaaagatgaggaa
attcttaaagttcttccctgccaacatgaatttcattcaagctgtgtggattcatggctg
acaaaatggggaacattctgccccgtgtgcaagcatgatataagaaccaaaattgtgaat
cccgagatcaaaagaaggacctggttgtacagctag
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