Prunus mume (Japanese apricot): 103340377
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Entry
103340377 CDS
T03196
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03020
RNA polymerase
pmum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103340377
09124 Replication and repair
03420 Nucleotide excision repair
103340377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103340377
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103340377
Enzymes [BR:
pmum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103340377
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103340377
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103340377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
103340377
NCBI-ProteinID:
XP_008242006
UniProt:
A0ABM0PN64
LinkDB
All DBs
Position
LG8:complement(12280367..12289515)
Genome browser
AA seq
1844 aa
AA seq
DB search
MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSVMRCVCFNCSKILVDEDDHK
FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSEAESGNVTPGDTFVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
SEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPSEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSSAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPFTSGVSPDY
SPSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKDTKDDRSTR
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcttcccattctcgccggcggaggttgccaaagtccgctgtgttcagttc
ggcattctgagcccggacgaaataaggcaaatgtctgtagtgcagattgagcacagcgag
accatgttgggaggcaaacccaagacggcaggtttaagtgatcctcggcttggtacaatt
gacagaaaaatgaagtgtgaaacatgtacggccaacatggctgagtgcccgggccatttt
gggcaccttgagcttgccaaaccaatgtttcacattggtttcatgaagaccgtgttgtcc
gtaatgcgatgtgtttgcttcaattgctcaaaaattctagtcgatgaggatgatcacaag
tttaagcaggctttgagaattaagagcccaaaaaataggctaaaaaagattttggatgca
tgcaaaaacaaaactaaatgtgatggtggtgatgaaattgatgtccaaggccaggaatct
gaagaacctgtaaagaaaagtcgcggcggctgtggtgctcagcagcccaagctctctata
gagggtatgaaaatgaatgcagagtacaaagcccaacggaagaaaagtgatgaccaggaa
cagcttcctgaacctgtggaaaggaaacagacacttactgcagaaagggttcttagtgtc
ttaaaaaggataagtgatgaggactcccagttattgggattgaaccctaaatatgctcgt
cctgactggatgattttacaagttctgcctattcctccacaacctgtgagaccctctgtg
atgatggacacctcatccaggagtgaggatgatttaacacatcagttagccatgattatt
cgtcacaatgagaatctgaggagacaggaaagaaatgggtcacctgctcatataatttca
gagtttgcacaactgttgcaattccacatagccacatattttgacaatgagttgcctgga
ctaccgagggctactcagagatcagggaggcctattaaatcaatatgtagtaggcttaag
gcaaaggaaggcagaataagaggaaatttaatggggaagcgagttgatttctcggcacga
acggtgattactcctgatccaaacataaacattgatcaattaggagtaccatggagtatt
gctttgaatctcacgtacccagagactgtgactccatataatattgaaaggttgaaggag
cttgttgagaatgggccccatcctccacctggtaaaactggtgcgaagtatataatacga
gatgatgggcaaaggcttgatcttcgttacttgaagaaaagcagtgatcatcatttggag
cttggatataaggtggagcgtcatttgaatgatggagactttgtcctcttcaatcgtcaa
cctagtctccataaaatgtctattatggggcacagaatcaagatcatgccgtactcaact
tttcgcttgaatttgtctgtgacctctccatacaatgccgactttgatggggatgagatg
aacatgcatgttcctcagtcttttgaaactagggcagaagtactggagctcatgatggtg
cccaagtgcatagtgtctcctcagtcaaatcggcccgtgatgggaattgtgcaggatacc
cttttagggtgtcgtaagattaccaagagggataccttcatagagaaggatgtttttatg
aatattttgatgtggtgggaggattttgatggaaaagttcctgctcctgcaattttgaag
ccacggccattgtggactggcaagcaagtcttcaatcttataataccaaaacagataaat
ctccaaagaacttctgcatggcactcggaagcagaaagtggcaacgttacccccggagat
acttttgttagaatagagaagggggagctacttgcagggacactttgcaagaagacactt
gggacatctacaggaagtctgatacatgtcatatgggaagaagttggcccagatgctgct
cgcaagttcctgggtcatacccaatggcttgttaactattggctactccaaaatgctttt
agcattggaattggagatacaattgctgatgctgcaacaatggagaaaatcaatgaaaca
atttcaaaggcgaaaaatgaggtgaaagatcttataagtaaagcccaatccaagcagctg
gaggctgaacctggacgaaccatgatggactcattcgaaaacaaagtgaaccaggttttg
aatagggctcgtgatgatgctggaagtagtgctcaaaagagtttatcggagagcaacaat
cttaaagccatggttacagcagggtccaaagggagttttatcaacatatcccagatgact
gcttgtgtggggcagcagaatgttgagggtaagcgtatcccttatgggttcatagaccgg
acattgccccacttcactaaagatgattatggaccagaaagtcgtggatttgtagaaaat
tcctacctgcgtgggttaactccacaggagttcttttttcatgctatgggtgggagggaa
ggtcttatagatactgcagtcaagacatctgagactgggtacattcaaaggagactggtg
aaggctatggaggatattatggtcaaatatgatggcactgtcagaaattcattgggggat
gttatacagtttctttacggggaagatgggatggatgctgtttggatagaatcacaaaag
ctggattctttaaagatgaaaaaatcagaatttgataagactttttcgtatgagcttgat
gatgaaaattggaatccagactacatgttgcatgaacatgttgaggatctcaaaactatt
agagagtttcgcaatgtgtttgatgcagaggttcagaaacttgaaacagacagattacaa
cttggaacagagatagcagtaacaggtgataattcttggccattgcctgttaacctgaag
aggctcatttggaatgcacaaaaaacctttaagattgacttccgaaggacttccgatatg
cacccgatggaaatcgtggaagctattgataagctccaggagaggctgaaggttgttcct
ggtgatgacttgttgagtgttgaagctcaaaagaatgctacactgtttttcagcattttg
cttcgcagcacttttgctagcaaacgggtgttggatgagtacaggcttactcgtgaagca
ttcgagtgggttattggggagatagagtcacgcttcctgcaatcacttgtagcacctggc
gaaatgattggttgtgttgctgcccaatctattggtgagcctgccactcagatgacactg
aatactttccactatgctggtgtgagtgcaaagaatgttaccctaggtgttcccaggttg
agggaaattattaatgtggctaagagaatcaaaacgccatctctgtctgtctacttaaag
tctgaagctaataaaacaaaggagagggcaaaaaatgtccagtgtgctttggaatacacc
actctccgaagtgtaactcaagctacagaagtgtggtacgatccagaccccatgagcaca
ataattgaagaggatgttgattttgtcaactcttactatgaaatgccagatgaagaggtt
aaccctgataaaatttctccttggttgcttcgcattgagttgaatcgcgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagatcaatcttgaatttgacgatgat
ttaacttgtatattcaatgatgacaatgcggaaaagttgatccttcgaatccgtatcatg
aatgctgaagctccaaagggggaattggttgatgaatctgctgaagatgatgtatttttg
aagaagattgagagtaacatgctgacagaaatggctcttcgaggtatcccagatattaac
aaagtgttcattaaacacggtaaagttaacaagtttgatccgagtgaaggatttaaagca
gagcaagagtggatgctggacacagaaggtgttaatctcttagctgtcctgtgtcatgat
gatgttgatgccaggaggacaacgagtaatcacttgattgaaattcttgaaattcttgga
attgaggcagttcgtcggtcactgttggatgagttgcgtgttgtcatatcttttgatggg
tcttatgtgaattatcggcatctggctatcctttgtgataccatgacctatcgtgggcac
ttgatggccattactcgtcatggcatcaatcgaaatgacaccggtcccatgatgaggtgc
tcatttgaagaaactgtcgatattcttcttgatgctgcagtgtttgcagaaacagactat
ttgagaggcgtaactgaaaacataatgttaggccagcttgcacctattggcacaggagac
tgtgccctgtatctcaatgacgagatgttgaagaatgcaattgaactccagctacctagt
tatatggatggtcttgatttcggtatgacaccatctcgttctccagtgtcgggaactcca
tatcatgagggcatgatgtctccaaattatttgctgagcccaaaccttcgtctgtcaccc
atttcagatgcccagttttctccctatgttggaggaatggcattctctcctacttcatct
ccgggctacagcccatcatcccctggctacagtccgtcctcccctggatacagtcccacg
tcccctggttatagtcccacctcacccgggtacagccccacttctcctgggtacagtccc
acctctccaacctatagtcctagttctccaggttatagtccaaccagtccggcctattct
cctacaagtccatcatactcacccacctcacccagctatagccccacttctccaagttac
agccccacttctccaagttacagccctacatctccaagttacagtccaacttcaccaagt
tacagtccaacatcacctgcttacagccctacatcacctgcttacagcccgacttcacct
gcatatagtcccacatcaccttcctacagccctacatcgccttcctatagccctacatca
ccttcctacagcccaacgtcgccctcctacagccccacatctccatcctacagcccaacc
tcaccggcctacagcccaacttctcctggttacagcccaacttctccgagttatagtcca
acttctcccagctatagtcctacatctccaagttacaatcctcagtcagccaaatacagt
ccttcgtcggcatactctccaagcagtccaagattgtcaccatctagtccatatagtcct
acgtctccaaattacagcccaacctcaccatcgtattcacctacttctccatcttactct
ccttcaagccctacgtacagtcctggaagcccatttacctctggagtgagcccagattat
agtccaagttctccacaatacagtccaagtgctgggtactcacctagtcaacctgggtac
tcgccgtcatctactagccagtacacgcctcaaacgagcgagaaggatactaaggatgac
agaagcactcgttaa
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integrated database retrieval system
