Prunus mume (Japanese apricot): 103340460
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Entry
103340460 CDS
T03196
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103340460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103340460
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
103340460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
Toxin_R_bind_C
OB_RNB
Motif
Other DBs
NCBI-GeneID:
103340460
NCBI-ProteinID:
XP_008242100
UniProt:
A0ABM0PND8
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All DBs
Position
LG8:12537101..12545638
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AA seq
934 aa
AA seq
DB search
MLQNKSFVKRTRGGKITKVVREHYLRHDIYCGAPICKVCDTSQARLSPTPSTILIFDTNV
VLNQIDLLENPAIDDVVVLSIVLEEVKNRNLSVYNRVRALCSNSLRKFFVFSNEHHKDTY
VTEMSGESKNDRNDRAIRVAAQWYQTHLAGSARILLITNDKENKRKAIEEGISAETVESY
VRSLSRPDLLDLLVQPASEDVNMEEVEDLRPSKRKIIYTEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDIVAVELLPQDQWHEEKSLALADE
EDEEEDVHLVPGSADDAPRTTAQPPGSAGVTEPISSRPSGRVVGIIKRNWHSYCGSLEPM
AMPAGSGGVAHALFASKDRRIPKIRIHTRQLENLLDKRIVVAVDSWDRLSRYPSGHYVRT
IGQIGDRDTETEVVLIENDINTRPFSSQVLACLPPLPWSVSSEDLANSIRQDLRQLRVFS
VDPPGCKDIDDALHCTSLPNGNYEVGVHIADVTNFVHSDTPLDDEASQRGTSVYLVERRI
DMLPKPLTEDVCSLRADVERLAFSVIWEMTPEAEIISTMYTKSVIKSCAALSYIEAQARM
DDSRLMDPLTTDLRNMNALAKIMRERRIQRGALTLASAEVKFQIDTETHDPLDIGMYQIR
EANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPTPTREMLEPLLRTAAAVGLNLDVSS
SKALADSLDSAVADDPYFNKLIRILATRCMTQAVYFSSGDLSPPEYLHYGLAAPLYTHFT
SPIRRYADVIVHRLLAASLGIQKLPTIFQDGNRLTSIADNLNYRHRNAQMASRASVELHT
LIFFRKRPTDTEARIVRIRSNGFFVFVPKYGIEGPVYLTPRGDKGGGEWFVDEQQQKIRK
MDGSMSYSVLQTVFIHLEIVEPQPNRPKLQLTLV
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagaacaagtccttcgtcaagagaaccagaggaggcaaaatcaccaaggtcgtg
agagagcactatctcagacacgatatatactgcggagctccgatatgcaaagtttgcgat
acatcccaggctcgcttgagccctacaccttccaccattctcattttcgataccaatgtc
gttctcaatcagattgatttgcttgaaaacccggcaattgacgatgtggttgtgctttcc
attgtgctcgaagaggtcaagaacaggaacttgtctgtttacaacagagttagagctctc
tgcagcaattctttaaggaaattctttgttttctccaacgaacaccacaaggatacatat
gttacggaaatgagcggagaaagtaaaaatgatcgaaatgatagagcaattcgggtggcc
gctcaatggtatcaaactcatcttgctggttctgctcggattttacttataactaatgac
aaagagaataagagaaaggctattgaagagggaatttctgcagaaacagtggagtcttat
gtgaggtcattgagtcgaccagatttgcttgacctgcttgtgcagcctgcgtcagaagat
gtaaacatggaggaagttgaagatttgagaccatcaaagaggaaaatcatttacacagag
cataagcccatgtctgagattacgtctggtttgcatcgcggtatataccatcaaggcaaa
cttagagtgaatcgttacaacccatttgaagcatatgttggaagtgagagcattggtgat
gaaattataatttatggacgtacaaacatgaatagggcatttgatggggatatagtggca
gttgagcttctgcctcaggatcaatggcatgaggagaaatctctagctctagcagatgaa
gaggatgaggaagaagatgttcatctggttccaggaagtgctgatgatgctcctaggact
acagctcaaccaccaggttctgctggagtaacagagcctatctcaagccgtccatctggc
cgtgttgttggtattataaagcggaattggcattcttattgtggatctttggagccgatg
gctatgcctgcaggtagtggtggtgttgcccatgccttatttgcctcgaaagatcgtagg
attcctaagattcgaatacacacacgacagcttgagaatcttctggacaagagaattgtt
gtggcggttgattcttgggaccgtttgtctcgttatccttctggccattatgtacgaacc
ataggacaaataggtgatagagatactgaaactgaggtggtcttgattgagaatgatata
aatacaagaccattttcttctcaagttctggcatgcttgccaccgttaccatggtctgtg
tcttctgaagatttggcaaattctattagacaggatttgcgacaattgcgtgtctttagt
gtggaccctcctggatgcaaggatattgatgatgcattgcactgtacatctcttccaaat
ggaaattacgaagttggagtccacattgctgatgtaacaaattttgtacactcggacact
cctcttgatgatgaggcttcacaaaggggcacttcggtctacctagttgaacggcgcatt
gacatgcttccaaaacctttgacggaagatgtatgttctcttcgagctgatgtggagagg
ctagctttttctgttatatgggaaatgacacctgaagctgagattatttctacgatgtac
acaaaaagtgtcattaaatcgtgtgcagcattgtcttacattgaagctcaagcgaggatg
gatgatagtcggttgatggatccattaactacagatttaagaaacatgaatgctttagca
aagataatgagggaaagacgtatccagagaggagccttaactcttgcatctgctgaagtc
aagtttcaaattgacaccgagactcatgatcctcttgatattggaatgtaccagattcgt
gaagcaaaccagatggttgaggaatttatgcttgctgctaatgtttcagttgctgagaag
atccttaaacattttcctctttgttcattattgaggcgccatcctactcccacgagagag
atgcttgaacctttgttgcgtacagctgctgctgttggtctcaacttggatgtctcatca
tcaaaagcactggctgattcacttgactctgcagtggctgatgatccatacttcaataag
ctgattcgtatattggctactagatgcatgacacaggctgtttatttctctagtggggat
ctcagccctcccgaatatcttcattatgggcttgcagcacctctgtatactcattttacc
tctcctataaggagatatgcagatgtcatagtgcacaggttgcttgctgcatctttaggg
atacagaagcttccaactatattccaagacggaaaccggctaactagcattgctgacaat
ttaaattatcgacatagaaatgcccagatggcaagccgggcctcagtggagctccatact
ctcattttcttcaggaaacggccaacggacacagaggcgagaatagtaaggataagatcc
aatggatttttcgtatttgtgcccaagtatggaatagaagggcctgtctacttgacccca
agaggtgataagggaggcggagagtggtttgttgatgagcagcagcagaagattagaaaa
atggatggcagcatgtcatacagtgttctgcagacggtgtttattcatttggagattgtg
gagccccagcccaataggccaaaactccagcttacgttagtgtag
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