Prunus mume (Japanese apricot): 103341053
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Entry
103341053 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341053
03041 Spliceosome [BR:
pmum03041
]
103341053
03036 Chromosome and associated proteins [BR:
pmum03036
]
103341053
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103341053
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103341053
mRNA cycle factors
Common to processing body (P body) and stress granule
103341053
Spliceosome [BR:
pmum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103341053
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103341053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103341053
NCBI-ProteinID:
XP_008242755
UniProt:
A0ABM0PPZ7
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All DBs
Position
LG8:15655141..15659348
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AA seq
613 aa
AA seq
DB search
MTMSWSDAVTESTRTPTRQPRPSYVPPHLRHSGSSYGYGSSTESAQYGFRSSNTGPGRQP
GRAGTGRGGRGRGRGGRFWAQPPPNPSLDLNPSDNVSEKFDQLKVTEEDSNGGINFDAYE
DIPVEASGADIPPPVDTFHEIDLGECLNHNIKTRCKYVKPTPIQRHAIPVVMAGRDLMAC
AQTGSGKTAAFCLPIISGVLNNNSLGRSPTRGGAHTVCPTALILSPTRELAGQIHDEAKK
FAYQSGVKIVVAYGGAPISQQFRNLERGVDILVATPGRLVDMIERSRVSLRMIKYLALDE
ADRMLDMGFEPQIRRIVEQMDMPCPGARQTLLFSATFPNEIQRLAADFLSNYIFLAVGRV
GSSTDLIAQKIEFVEDMDKRSHLMDHLHSQQANGSHGKPALTLVFVETKRGADALENWLC
MNGFPAIAIHGDKVQMERERALRSFKCGSAPILVATDVASRGLDIPHVAHVINFDLPKGI
DDYVHRIGRTGRAGNSGLATAFFNDKNQPLAKGLIELMQESNQEVPSWLNEYAEGSQTYT
SGGGGGRSQRSGGSRFGGYDFRRSAQSGRESYYGPSSYGYGDCSVGTSAASYNDVTVPYG
YGNYETIVAGGWE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgtcttggtctgatgctgttactgagtcaacccggacgcccactcgccaacct
cggcccagctacgtacctccacatctcaggcacagtggcagctcctacggatatgggtcc
tctacagagtcagcccagtacggctttcggtcaagcaacaccggtcccggtaggcaaccc
ggtcgggccggcacgggtcgcgggggccgaggtcgtggccgtggtggtcgcttttgggct
caaccacccccaaacccaagtctagacctaaacccgtctgataatgtctctgagaaattc
gaccaactcaaagtcactgaagaagatagcaatggcggtatcaattttgatgcctacgaa
gacatcccagttgaggcgagtggcgccgacattccaccgccggtggacacctttcacgag
atcgatttgggtgagtgtttgaaccacaacatcaaaacgcgatgtaagtacgttaagccc
actcctattcagcgccacgcgattccagtagtcatggctggccgggacttaatggcttgt
gctcaaactgggtctggcaaaacggcggcgttttgcttacccatcattagtggggtcttg
aacaataacagtttgggaaggtcgccgactcgaggtggggctcatactgtgtgtcctact
gcgctcattttgtctccgactagagagttggctggtcagatacatgatgaagctaagaag
tttgcttatcagagtggggtcaagattgttgttgcttatggtggggcaccaatttctcag
cagttccgtaatctggagagaggtgttgatatcttagttgccactccagggcgcttagtg
gacatgattgagaggtcacgagtttcacttagaatgatcaaatatttggcattagatgag
gctgataggatgttggacatgggttttgagccacagattagaaggattgttgaacaaatg
gacatgccttgccctggtgctagacaaactttgcttttcagtgctacattcccaaatgag
atacagaggcttgctgcagattttctttcaaactacatattcctggcggttggaagagtt
ggatcaagtactgatcttattgcgcaaaaaatcgaatttgttgaggatatggacaaacga
agccacttaatggatcatcttcatagccagcaggccaatggaagccatggcaagcctgct
ttaacgttggtgtttgtggagaccaagagaggtgcagatgctttagaaaactggttatgc
atgaatggtttcccagcaattgctattcatggtgacaaagtgcaaatggagagggaacga
gctttgagatcattcaagtgtggctctgcgccaatattggtggcaacagatgttgcttca
cgaggtttagacatccctcatgttgctcatgtcatcaattttgacctcccaaaaggcata
gatgactatgttcacaggattggtcggacgggacgtgctggaaattctggtcttgcaact
gccttcttcaatgacaagaaccagccacttgcaaagggactaattgagttgatgcaggag
tcaaaccaggaggttcctagttggcttaacgaatatgctgaaggatcacagacttatact
agtggtggcggtggtggtaggagccaaaggtctggtggcagtaggtttggtggctatgac
ttccgtaggtctgcccaatcggggcgtgagagttattacggtccaagcagctatggttat
ggagattgttctgtgggcacttctgctgcttcctataatgatgttactgttccatacggc
tatggaaattatgaaactattgttgctggtggttgggaatag
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