Prunus mume (Japanese apricot): 103341117
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Entry
103341117 CDS
T03196
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103341117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341117
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103341117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_12
ARM_TT21
TPR_11
TPR_10
TPR_19
TPR_MalT
ARM_TT21_N
SRP_TPR_like
TPR_8
HEAT_Nup120
ANAPC3
DUF627
HAT_Syf1_CNRKL1_C
TPR_3
Motif
Other DBs
NCBI-GeneID:
103341117
NCBI-ProteinID:
XP_008242819
UniProt:
A0ABM0PQ53
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Position
LG8:16069881..16076467
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AA seq
832 aa
AA seq
DB search
MASSSSSSLTVANRDGSSSASEDEAIMSVTRAYAQDALLQFQSGKFDQCLTALSECLKRK
PNDPKIFHNIGLSEFYRDGCSHPKRLLDVLNDVKKRSEELARASAEQVESGSNIGGSRGS
STMGHPFSAVYMDEFDTYVATLNIAVIWFHLHEYAKALSVVEPLFQNRGPIDEKTALNIC
LLLLDVGLACHDATKSADVLVYLEKAFGVSCMNQGDSGSTALQQPANPVAKSPSLPTNSS
AADGPNLDSDANALESEETGEYDGAVFDMDVAQPTALLSSNDLSRNPVDISVSSVYLKLK
MQLYKVRFLLLTRNLKQAKREVKHAMNIARGRDSSMALLLKSQLEYARGNYRKAIKLLMA
SSNRTDARISSMINNNLGCIYYQLGKYHTASVFFSNALLNCSSLRKDRPINLLTFSQDNS
LLIIYNSGMQYLACGKPLLAARCFQKAGLVFYNRPLLWLRFAECCLMALEKGLLETTLAS
SEVRVYVIGNGKWRQLVMEDGVSKNGNSGSFERGDLFLGSDQQPKLSMSLARQCLSNALY
LLNCSESSYCKNSLPSNFFLEDNELGEVASSKNSNNKNFHSIDSEASAFSVGLGQSGING
DAKEQKAGTTQELVQNSLLYYADIRNKENLLLKQALLANLAYVELELENPMKALSIARSL
LELPECSRIYIFLGHVYAAEALCLLNRAKDAADHLMTYLSGGNNVDLPFSEEDSEQLQGV
RAVDYEELNGGSMSAKSSSPEDTLGIVFLKPEEALASLYVNFAALYAMQGELDQARQFVA
QALSIVPNSPEATLTAVYVDLKLGKSQEALAKLKQCSRVTFLPSGLTLNKAS
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcttcatcttcgtcattaacggttgcgaatcgggacgggtcttcttcagct
tctgaggacgaagccatcatgtccgtaacccgtgcttacgcgcaggacgccttattgcaa
ttccagtcgggcaagttcgatcagtgcctaaccgccttgtccgagtgcctgaagaggaag
ccaaacgatcccaaaatatttcataatatcggactttcggaattctatcgagatggttgc
tcacatcctaagaggttgcttgatgtacttaatgatgtgaagaaacgaagtgaagagctt
gctcgagcatctgcagaacaggtggagtcgggtagcaatattggagggtccagaggaagt
agtacaatgggacatcccttttctgctgtttacatggatgaatttgacacatatgttgct
accttaaacattgcagttatctggttccatcttcacgaatatgcaaaggcattgtctgtc
gttgaacctctgtttcaaaatagaggacctatagatgagaaaactgctcttaatatttgc
cttttgttgctggatgttgggctggcttgccatgatgcaacgaaatctgctgatgttttg
gtttatctggaaaaagcttttggtgttagctgtatgaatcaaggagacagtggaagcact
gcgttgcaacaacctgcaaacccagttgcaaagtctccatcacttcctaccaattcatca
gcagcggatggtcccaatttggattcagatgcaaatgccttggagtctgaggagacaggc
gagtatgatggtgctgtttttgacatggatgtcgcacagccaactgctcttttatcttca
aatgatctttcaaggaacccagttgacatatccgtctcttctgtttatctgaagcttaag
atgcaactttacaaggttcggtttctgcttctcactaggaacttaaagcaagctaaacgt
gaagtgaagcatgctatgaatattgcacgcgggagagattcttctatggctctcctcttg
aagtcccagcttgaatatgctcgtggtaattatcgtaaagccatcaagttgttgatggca
tctagtaatcgaacagatgcaaggatatcaagcatgatcaacaataatctaggatgcatt
tattatcagcttgggaaatatcacacagcttcagtattcttctccaacgcattgcttaat
tgttcatctcttcggaaggacaggcctataaatctgttaactttttcacaggacaattcc
ctcctaattatatataactctggtatgcagtacttggcctgcgggaaaccactacttgct
gctcgctgttttcaaaaggctggtttagttttctacaaccggcctctgttgtggcttcga
tttgctgagtgctgtctgatggctttagagaagggattattggaaaccactctggcatca
tcagaagtcagagtttatgtcattggcaatgggaagtggaggcaacttgtaatggaagac
ggggtttccaagaatggaaactcgggttcttttgaaagaggtgatttgtttttgggaagt
gatcagcagcctaagctctcgatgtcccttgcacggcagtgtctctctaatgccctgtac
ttactgaactgttctgagtcaagctattgtaagaattctttgccctctaatttcttctta
gaggataatgaattaggtgaagtggcatcttccaagaactcaaacaacaagaactttcac
agcatcgattccgaggcatctgcgttctctgtaggcttgggccagtcaggcataaatggg
gatgcaaaagagcaaaaggcaggaactactcaggagcttgtgcagaactcccttttgtac
tatgcagatattcgtaacaaggaaaatctgttgctcaaacaagctcttcttgcaaatctg
gcatatgtagagttggaattggaaaatcctatgaaggccttgtcaattgcaaggtctctc
ttggaacttccagaatgttcaagaatttacatctttttaggtcatgtgtatgctgcagag
gctctctgcttgctgaacagggcaaaggatgctgctgatcatttgatgacatatttgtct
ggaggtaacaacgttgacttgccattcagcgaggaggactctgagcaattgcaaggagtc
agggctgttgattatgaagagttgaatggaggatcaatgagtgccaaaagttcttcccct
gaagacacattaggtatcgtgttcctcaagccagaagaggcactagcaagcctgtatgta
aattttgctgccttgtacgctatgcagggtgaacttgatcaggcccgccagtttgttgca
caggcattatccatagtacccaacagtccagaagcaactttgactgcagtttacgtggat
ctcaagctcggtaagtcgcaagaagctcttgccaagttaaaacagtgtagtcgagttaca
ttccttcctagtggattgacattgaacaaagcttcgtag
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