Prunus mume (Japanese apricot): 103341546
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Entry
103341546 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103341546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341546
03012 Translation factors [BR:
pmum03012
]
103341546
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103341546
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103341546
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103341546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
NACHT
nSTAND3
AAA_19
ATPase
Dicer_dimer
T2SSE
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
103341546
NCBI-ProteinID:
XP_008243310
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MPSSSLAFLFLPSPSLQFAAAPSHPKPIAFKPSPSPSPSLLAMKDRPPSSYGAVYVPPHH
RLRSVITSPNYTSAASIGSKLRENQSAALNRRSTNGTLTYYQTQQQEQLQKPKLQHNSAY
DDGVSEEGSDREVELPSRPTQGASPSDNIDDWKRRLTMLLRDKEKQEFVSREKKDRRDFE
KIAALASRMGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVEGYLGEF
LSQKSRRKEGLPDASFSRSNSSGSIATDEGLFEQPESLASSKVVMEKILWRRSLQLRDKQ
QAWQESPEGRKMLELRRSLPAYKEKDALLTAISRNQVVIISGETGCGKTTQIPQFILESE
IEAVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCT
TGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDS
ELFSSYFGRAQIIHVPGFTYPVRTHFLEDVLEITGCRLTPYNQIDDYGQEKMWKMSKQAP
RKRKSQIASVVEDALKAADFNGYGPQTQESLACWNPDCIGFNLIEYLLCNICESERPGAI
LVFMTGWDDINSLKEKLHANPLLGDSSRVLLLACHGSMASSEQRLIFDEHEDGVRKIVLA
TNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGE
CYHLYPRCVYEAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPELLAVQNA
IEYLKIIGALDENENLTVLGRYLTMLPVEPKLGKMLLVGAIFNCLDPVLTIVSGLSVRDP
FLTPFDKKDLAEAAKSQFSRDYSDHLALVRAYEGWKVAERDFAGYDYCWKNFLSAQSMKA
IDSLRKEFFSLLRDTDLVDANTTTHNAWSYDEHLIRAVICYGLYPGICSVVHNEKSFSLK
TMEDGQVLLYSNSVNAREPKIPYPWLVFNEKIKVNSVFLRDSTAVSDSMLLLFGGSFSKG
AVDGHLKMLGGYLEFFMKPAIAEMYQCLKGELDELIQTKLLNPRMDTHAFHELLSAVRLL
LSEDQGEGRFVFGRQVLTSSKPSVLAAQPASTLVSRTDSGPGGDNSKSQLQTLLTRAGYA
APTYKTKQLKNSQFRATVEFNGMEIMGQPCNNKKSAEKDAAAEAIQWLVSGTQMGHGYIN
HVSMMLKKSKRDHN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgccctcatcatctctagcttttctctttcttccatctccttctctccaattcgccgcc
gcaccttcacatcccaaacccattgccttcaaaccctcaccttcaccctctccctcactc
ctcgcgatgaaggaccggcctccgtcttcgtacggcgccgtttacgttcctccgcaccat
cgcctccggtcagtcatcactagccctaattacacctctgctgcttcaattggctccaag
ctccgcgagaaccagagtgctgctctgaaccgtaggagcaccaatggtactctgacttac
taccagactcagcagcaggagcagctgcagaagcccaagttgcagcacaattctgcttac
gacgacggcgtttctgaggaagggtccgatcgcgaagttgagttgccatcgcgtccgact
cagggtgcttccccgtctgataacattgatgattggaaacggagactaacaatgctgtta
cgtgacaaggagaagcaagagttcgtttcaagggagaaaaaagatagacgtgattttgag
aaaatagctgctttggcaagcagaatggggctttatagccatctatatgcaaaagttgct
gtctttagcaaggtcccactgccaaactacagatttgacctcgatgacaggcgccctcag
agagaggtgaccttgcctcttgggttgctgaggagagttgagggctatcttggagaattc
ctttctcagaagtctaggaggaaggaagggcttccagatgcttccttttctagatcaaac
agtagtggcagcattgctactgatgaagggctttttgagcaaccggaatcattggcgtct
agtaaggttgtaatggaaaaaattctttggcggagaagcttgcagctgcgtgataagcaa
caagcttggcaggaatctcctgagggtagaaaaatgctggaacttcggagaagtctccct
gcctataaagagaaggatgcattgttgactgcaatttcacgaaatcaggttgttatcata
tcaggtgaaactggctgtggcaagaccactcaaattccacaattcattctagaatctgag
atagaagctgttcgtggagctgtttgtagtattatatgtacacagcctagacgaatatct
gctatgtctgtttctgaaagagttgcttcagagagaggggagaaattgggtgaatcagtt
gggtataaggttcggttagagggtatgaaagggagggacactcgccttctcttttgcacc
actggcattttgttgagaagattactggttgatagaaatttgaaaggtgtaactcatgtg
attgttgatgaaattcatgaacgtggaatgaatgaagattttctgcttattgttctcaag
gatctcctacctcgtcgaccagaactgaggctgattctgatgagcgcaaccctagattct
gaacttttctcatcctactttggtagggctcagataattcatgttccaggttttacatat
ccagttcgaactcattttctggaggatgttctggaaattacgggctgcagattaactcca
tacaatcagattgatgattatggtcaagaaaagatgtggaaaatgagcaaacaggcacca
agaaagaggaaaagccaaattgcatccgttgttgaggatgcacttaaagcagccgatttt
aatgggtatggtccccagactcaggaatctctagcatgttggaatcctgattgtatcggt
tttaatctcatagagtatcttttgtgcaatatctgtgagagtgaaaggcctggtgctatt
ctagtttttatgactggatgggatgacatcaactctctgaaggaaaagttacatgccaat
cctctcttaggtgattcaagccgagtcttgttgcttgcatgccatggttctatggcaagt
tctgagcagaggttaatatttgatgagcatgaggatggagtgaggaaaatagtgctggct
actaatattgctgagacaagcatcacaattaatgacgttgtttttgttcttgattgtgga
aaggcaaaagagacttcatatgacgcactgaataatactccttgtttgcttccttcctgg
atttccaaggtgtctgctcaacaaagaagaggaagagctggacgtgtccagcctggggaa
tgttatcatctctatcctagatgtgtatatgaagcatttgcagagtatcaattgccagaa
attttgagaacgcctctgcagtctctctgtctgcaaataaaaagtttaaacctaggaagc
atttctgagttcttatctagggctctgcagtcaccagagttactcgcggtgcaaaatgcc
atagagtatttaaagatcattggggccttagatgagaacgagaatctgactgttttagga
cgctatctaactatgcttcctgtggagccaaaacttggaaagatgctcttggtaggcgcc
atcttcaactgcctggatccagttttaactattgtttctggccttagtgtcagagatcct
ttcctaacaccatttgacaagaaagaccttgctgaggcggcaaagtcacagttttcacga
gattatagtgatcaccttgctcttgtgcgggcctatgagggctggaaggttgctgaaaga
gactttgctgggtatgactactgctggaagaactttctttcagcacaatcgatgaaagct
attgattctcttaggaaggaattcttctctttgctcagagatactgatcttgttgatgcc
aacaccaccacccataatgcatggagttatgacgagcatctcatccgtgcagttatttgc
tatggcctgtatcctggaatttgctctgttgtgcacaatgagaagtcattctcattgaaa
actatggaggacggtcaggtactgctatactcgaactctgtcaatgctcgggaacctaaa
attccatatccatggctggttttcaatgagaagataaaagtgaactctgttttcctacgg
gattcaacagctgtgtctgactcaatgctcctcctatttggtggaagcttttcaaaaggg
gctgtagatggacacttgaaaatgctgggaggatatctggagttcttcatgaaacctgct
atagcagaaatgtatcaatgtttaaaaggggaacttgatgagttaattcaaaccaaacta
ctgaaccccaggatggacacacacgcatttcatgaactcctttctgcagtgcggttgctg
ctctcagaggatcaaggagagggtagatttgtatttggccgccaggtccttacatcctca
aagccatctgtcttggcagcacagccagcctcaaccttggtttcaagaactgacagtggc
cctgggggtgataattctaagagtcagctccagacattgctcacaagagcaggatatgct
gcacccacctacaaaactaagcaactgaagaacagccagttccgagctacagtagagttt
aacggaatggaaattatgggccagccttgtaataacaagaagagtgcagaaaaagatgca
gcagctgaggccatccagtggctggtgagtggaacacaaatgggccacggttacatcaat
catgtgtcaatgatgttgaagaaaagcaaaagggaccataattaa
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integrated database retrieval system
