Prunus mume (Japanese apricot): 103341715
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Entry
103341715 CDS
T03196
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103341715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341715
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103341715
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103341715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
103341715
NCBI-ProteinID:
XP_008243475
UniProt:
A0ABM0PRQ3
LinkDB
All DBs
Position
Unknown
AA seq
283 aa
AA seq
DB search
MSLPDPAQRPLPLGILTRSVWSDNLDSEFELIRSVIDDYPLISMDTEFPGVVVRPDPNDP
TLRHREPDAHYLMLKANVDRLNLIQVGLTLSDDNGNLPNLGTENMYIWEFNFRDFDVARD
PHAHDSVELLRRQGIDFDRNRDFGVDSIRFAELMMSSGLVCNSEVNWVTFHSAYDFGYLV
KVLTQRVLPEKLPEFLNYVRVFFGSGVYDVKHLTKFCAGLYGGLDRICQTLKVSRVIGKT
HQAGSDSLLTLHAFQRIRKDYFSKDGKDFIEKFAGVLYGLEVS
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgtctttacccgacccggcacagcgccctctgcccctaggcatcctgacccggtcggtc
tggtccgataacctcgactccgagttcgaactgatccggtccgtcatcgacgattacccg
ctgatttcaatggacaccgagtttccgggcgtcgttgtccgacccgaccccaacgacccc
actctccggcaccgggaacccgacgcgcactacctcatgctcaaggccaacgtcgatcgt
cttaatctgattcaagtcggcctcacgctctcggacgacaatggcaatttgccgaatttg
ggcaccgagaatatgtatatttgggaattcaatttccgggacttcgacgtggcgcgagac
ccccacgcgcacgactcagtggagttgcttcggcggcaggggatcgatttcgatcggaac
cgggatttcggggtcgactcgatccggttcgccgagctgatgatgtcatcggggctcgtc
tgcaacagcgaagtaaattgggtcacgttccatagcgcttacgattttgggtacctagtc
aaggtgttgactcagcgagtcttgccggaaaagctgcccgagttcttaaattatgtgagg
gtgtttttcgggtctggagtttacgacgtgaagcacctgacgaagttctgtgccggccta
tatggtgggttggaccggatctgccagaccctgaaggtgagtcgggttatcgggaagacc
caccaggccggatcagatagcttgttgaccttgcacgctttccagaggatcagaaaggac
tacttttccaaggatggcaaggacttcattgagaagttcgccggcgttttgtatggtctg
gaggtttcttga
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