Prunus mume (Japanese apricot): 103341897
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Entry
103341897 CDS
T03196
Name
(RefSeq) uncharacterized protein LOC103341897 isoform X1
KO
K06100
symplekin
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103341897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103341897
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341897
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103341897
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103341897
U7-dependent histone pre-mRNA processing factors
103341897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
HEAT_EZ
HEAT_2
PRO8NT
Motif
Other DBs
NCBI-GeneID:
103341897
NCBI-ProteinID:
XP_008243673
LinkDB
All DBs
Position
LG1:complement(22200696..22211952)
Genome browser
AA seq
1327 aa
AA seq
DB search
MVGMMMVANSNERLASLMDSAILASDIPSKLDRLRQSKQDLVVQQDPALLSGLLPRLFEL
QSDRFSPVRKFATEMLGEIGLMHVELLPEIVPSLINVLSDGTPAVARQAITSGIHLFRCV
LEKVSIQGLHSSELDSLLESSWAWVLKLKEEIYSIAFRPGSGGIRLLALKFVESVILLYT
PDPNGSPEPPAHEGDLVEFNISWLRGGHPLLNVGDLSIEASKSLGLLLDQLRFPTVKSLG
NLVIVVLINSLSAIAKKRPAFYGRILPVLLGFDPSSAVINGVHVSGAHHALKNAFLTCLK
CTHKGAAPWRDRLVGALRKLKAGGLVEQAIPQASKINGSVEDGLDDSPITKEEKPTIKTS
NAVQISSGRKRLGALDSSDLAEDEDVSGKRAKSTSSVSEESVKECDRNISVSQDDISSSG
TTTSRGDSDSGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMYNLPPN
LAGAEGDESLMNMGIVGGDSRVKYPPSFIADVLSLTSTFPPIAALLDTHQLVSNDIVKPE
VEEEQVASVVDSAVASTGMDYEAEHSMLPTSSPFSSEMEKGCQPVPSDVHDMEYLESEIP
GLDSSACNSGLSEPFVASSSALMDVEDASQEQVTSSDQRTQLNVLPSLSADKSEELSPRA
AVADVNSLVSSTATSVGLSSHLVLPKMSAPVVILADEEKDQLQKLAFTRIIEAYKQIAIA
GGSQLRCSLLINLGVEFPLELDPWKLLQKHILADYTNNEGHELTLRVLYRLFGEAEEEHD
FFSSTTATSVYETFLLNAAETLRDSFPASDKSLSRLLGEVPYLPNSVLKLLECMCSPGGS
DTTEKETQGGDRVTQGLSTVWSLILLRPPFRDPCLKIALQSAVYHLEEVRMKAIRLVANK
LYPLSSIAQRIEDFAIEMLLSVKCGDATERTDAEGSKTESQKDSDLEKHSNEPPSVSGNS
KDISSDTHQSCNSQSVSSLSIAEAQRCLSLYFALCTKKHSLFRQIFAVYGSASKAVKQAV
HRHIPILVRTMGSSPDLLEIISDPPSGSESLLMQVLHTLTDGIVPSRELVFTVRKLYDSK
LKDVEILIPILPFLPKEEVMLIFPQLVNLQLDKFQAALARTLQGSSNSGPLLAPAEILIA
IHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAI
GAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCAFLTKPQSFGVLLQLPPAQLENALK
RTAALKAPLVAHASQPDIRSSLPRSILVVLGIVSDSQAQTSQSQAGDASNSDKEAVAEKS
KESSSAC
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atggtaggcatgatgatggtcgcgaactccaacgaaagactcgcgagtctcatggactca
gccatcttggcctctgacataccgtcgaagctcgaccggctacgccaatcaaagcaagat
ttggtggtccaacaagaccctgcgttgctctctgggctccttcctcgccttttcgagctt
cagtccgaccggttcagtccggttcgaaaatttgccactgaaatgcttggcgaaattgga
ctgatgcacgtagaattattaccagaaattgtaccttcgttaattaatgttttgagtgat
ggaacaccggcagttgctcgacaagccatcactagtgggattcatttatttcgttgtgtt
ctcgaaaaggtttcaattcagggtttacattctagtgaattggatagtttgcttgagtca
tcttgggcatgggtgttaaagttgaaggaggaaatatactcgatagcttttcggccagga
agtggggggataaggttgctagcactgaaatttgttgaatcagtcattcttctttacact
cctgatcctaatggctccccagagccccctgctcatgaaggtgacttggtggaatttaat
atatcttggcttcgtggtggccatcccctactcaatgttggagatttgtcaattgaggct
agtaaaagtttgggtttattgcttgatcaactcaggttcccaaccgtgaaatcgcttggt
aacttagtgatcgttgtgcttattaatagtctttcagcaattgcgaagaagaggcctgca
ttctatggtcgcattttgcctgtattacttggatttgatccctcaagcgctgtcattaat
ggggtacatgtctctggggcgcaccatgccttaaaaaatgccttcctcacctgcttaaaa
tgtacacacaagggtgctgcaccgtggcgggatcgtttagttggggccttgagaaagttg
aaagcaggagggttggtagagcaagccattcctcaagcttccaagattaatggaagtgtg
gaggacggactagatgattctccaattactaaggaggagaaacccacaattaaaacatct
aatgctgtgcaaattagttctgggaggaaacggttaggagcactggatagtagtgacctt
gcagaggacgaagatgtttctggaaagcgtgccaaatcgacatctagtgtctctgaggaa
tcagtgaaagagtgcgataggaatatttctgtgtctcaagatgacatttcttcaagtgga
actaccacttctagaggagatagtgatagtggacctgtgcagcaactcgttgctatgttt
ggtgcattggtagctcaaggtgaaaaagcagttggttctttagaaattcttatctcaagt
atctctgctgacttgctagcagaggttgtgatggctaatatgtacaaccttcctcccaat
cttgctggagctgaaggagatgaatctctgatgaacatgggtatagttggcggtgattct
cgagttaaatatccaccatcatttattgctgatgttctctcacttacaagtactttccct
ccaatagctgcactcctagatactcatcagttagtgtccaatgatatagtgaaacccgaa
gtggaggaagaacaggtagcatctgtagttgatagcgctgttgcaagtactggcatggat
tatgaagctgaacattctatgttgccgactagttcaccattttcatctgaaatggagaag
ggttgtcaacctgtgccatctgatgttcatgatatggaatatcttgagagtgaaatacct
gggctggattcttctgcttgtaatagtggattatcagaacccttcgttgcatcctcatca
gctttaatggatgtagaagatgcaagtcaagagcaagttaccagttcggatcaaaggaca
caacttaatgtacttccatcactgtcagcggataagtctgaggagcttagcccaagagct
gccgttgcagatgtcaatagcttggtttcttcaacagcaacttcagttgggttgtcctct
catcttgtcttgcccaagatgtcggcaccggtagtcatccttgctgatgaagagaaggat
cagttgcagaaattggcttttacgcgcatcatcgaggcatataagcaaatagctattgcg
ggaggttcacaattacgatgctctctccttataaatttaggagttgagttccctttggag
ttagacccatggaaactgctgcagaagcatatcttggcagattatacgaataatgaggga
catgagttgacattgcgtgtcctatacaggttatttggagaggcagaagaggaacacgat
ttcttttcttcaacaactgctacttctgtatatgaaacgttccttttgaatgcggcagaa
acacttagagattcttttccagcgtctgacaaatcattaagcagattacttggcgaggtt
ccttatttaccaaattcagttctgaaattattggagtgcatgtgctcacctggaggcagc
gacacaactgagaaggaaacacaaggtggggatcgagtgactcaaggtctcagcactgtg
tggagcctgattttgctgaggcctcctttccgcgatccctgcttaaaaattgctttacag
agtgcagtttatcatctggaggaagtgcgtatgaaagctatacgtctggttgcaaacaag
ctttatcctttgtcatccattgctcaacgaatagaagatttcgcaattgaaatgttgctt
tctgtaaaatgtggtgatgcaactgaaaggacagatgctgaaggatcaaaaacagaatca
cagaaggattctgatttggaaaagcattcaaatgaacctccatctgtgagtggtaacagt
aaagatatctcctctgatactcatcaatcatgcaattctcaaagtgtatcatccctttca
attgctgaggcccagcggtgtttgtcattatattttgctctatgtacaaagaagcattcc
ctttttcgccaaatatttgctgtttatggaagtgcatcaaaggccgttaagcaggcagtt
catcgtcacattccaatacttgtacgtactatgggatcgtcaccagatcttcttgaaatt
atttctgatcctccaagtggaagcgagagcctcctgatgcaggttttgcatacactgaca
gatgggatagttccttctcgagaactggtttttactgttaggaagctatatgattcaaaa
ctgaaggatgtagagattcttattccaatattgccctttttaccgaaagaagaggttatg
cttatatttccccaacttgtgaatcttcaactggataagttccaagcagcactagctcgc
acactacagggatcatccaattctggtcctcttcttgctccagctgaaatcttgattgct
atccatggaattgatcccgacagagatggaattccactaaagaaggtcacagatgcatgc
aacgcctgctttgagcagaggcagatattcacccaacaagttcttgccaaagttttgaat
caattggttgagcagattccccttcctttactgttcatgcgtacagtattacaagccata
ggtgcttttcctgcactggtggattttataatggagatcctctctcgacttgtgagcaag
cagatatggaaatacccaaagttgtgggtgggattcttgaagtgcgcattcttgacaaag
cctcagtcatttggcgtcctgcttcagctacctccagcacagctagaaaatgcactgaag
agaactgcagctctgaaagcaccgttggttgctcacgctagccaaccggacatccgatct
tcacttccaaggtccatattggtagttctaggaattgtttcagattctcaggctcaaacc
agtcagtctcaggcgggagatgcaagcaactcagataaggaggcagtcgcagagaaatca
aaggagtcatccagtgcttgttga
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integrated database retrieval system
