Prunus mume (Japanese apricot): 103341958
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Entry
103341958 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103341958
09122 Translation
03013 Nucleocytoplasmic transport
103341958
03015 mRNA surveillance pathway
103341958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341958
03041 Spliceosome [BR:
pmum03041
]
103341958
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103341958
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103341958
Spliceosome [BR:
pmum03041
]
Complex C
Other components
EJC/TREX
103341958
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103341958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103341958
NCBI-ProteinID:
XP_008243728
UniProt:
A0ABM0PSA2
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEIRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRILA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaatcagagacaacgatggttacgaagaggagctggtcgattatgaagaggag
gaccaaaatgcccccaactccgtctccgccaagccgtctggtgatactgttaaaaagggc
tatgttggcatccacagttcaggattcagagacttcctgttgaaaccagagcttcttcga
gcgattgtggattctggattcgaacatccttcagaagttcaacatgagtgcatccctcaa
gctatattaggaatggatgttatctgtcaagcaaaatctgggatgggaaagaccgccgtc
tttgttctatcaacccttcagcaaatagatccggttgctggtcaggttgctgctcttatt
ctttgccacacaagagaactggcttaccagatttgtcatgaatttgagagattcagtacc
tatttgccggacctaaaggttgcagtcttctatggaggtgtcagtatcaaggttcacaaa
gacttgctgaaaaatgaatgtcctcacattgttgttggaacacctgggagaatattagct
ttggcaagagataaagagcttggactaaagaatgtcagacattttattctcgatgaatgt
gataagatgcttgagtcacttgatatgaggagagatgtgcaggagatctttaagttgact
cctcatgacaagcaagtgatgatgttttcagcaacactaagcaaagaaatccgccctgtt
tgcaagaaatttatgcaagatcccatggaaatttatgtagatgatgaggccaaattgaca
cttcatggtctcgtacagcactacatcaaattgagtgaacctgagaaaaaccgcaagttg
actgaccttcttgatgcattggatttcaaccaagttgttatttttgtaaaaagtgtaagc
agagcagctgagctgaacaaattacttgctgattgtaacttcccatctatctgcattcac
tctggaatgcctcaggaagaaaggttgaaacgttacaagaatttcaaggaggggctttca
aggattcttgtggcaacagatttagtaggaaggggaattgatatcgagcgtgttaacatt
gttattaattatgacatgccagattctgccgatacctacttacacagggttggcagagct
ggtaggtttggtaccaagggactggcaattacatttgtctcttctgcatcagactctgat
gttcttaatcaggtccagtcaaggtttgaggtggacataaaggagcttccggagcaaatt
gatacttctacatacatgcaagtatga
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