Prunus mume (Japanese apricot): 103341988
Help
Entry
103341988 CDS
T03196
Name
(RefSeq) chaperonin 60 subunit beta 4, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103341988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103341988
03110 Chaperones and folding catalysts [BR:
pmum03110
]
103341988
03029 Mitochondrial biogenesis [BR:
pmum03029
]
103341988
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmum04147
]
103341988
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
103341988
Messenger RNA biogenesis [BR:
pmum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
103341988
Chaperones and folding catalysts [BR:
pmum03110
]
Heat shock proteins
HSP60 / Chaperonin
103341988
Mitochondrial biogenesis [BR:
pmum03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
103341988
Exosome [BR:
pmum04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
103341988
Exosomal proteins of other body fluids (saliva and urine)
103341988
Exosomal proteins of breast cancer cells
103341988
Exosomal proteins of colorectal cancer cells
103341988
Exosomal proteins of bladder cancer cells
103341988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
103341988
NCBI-ProteinID:
XP_008243762
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MFSTMAFSPTPISSFSFTNPTLPRRISSVPSAVNSKGVAKDLIFNHDGSATKKLLAGVDM
VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKQIELEDPVENVGVKLVRQAGAKTN
DLAGDGSTTAVILAHGLITEGVKVTAAGLNPIQIARGIEKTAAALVSELKLISREIEDHE
LAHVAAVSAGNDYAVGNMIYDALLQVGKKGVVTIEQGKCTENNLQIVEGMQFDRGYLSPY
FVTDRRRRIVEFQNCKLLLVDKKITNPKEMFKLLDNAVQEKYPMVIVAEGIEQEALAPVI
RNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGTVVRDEMGIILEDAGKEVLGTATKV
VITKDSTLIVTDGSTREAVEKRVSQIRKLVENTEEEFQKKILNERIARLSGGVAILQVGA
QTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKVDGIKELLDNEEQKIGAE
IFKRALSYPVKLISKNAGVNGNVVVEKILSNDNMGYGYNAAKDCYEDLMKAGIMDPSKVV
RCCLEHAASVAKTFLTSDAVVVDIKETQPFPRRMPPKLPNIPRRMPPELPNIPRRMPPDL
RNIPRRRPTPMSMSMPNSGAGPFGL
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaaccatggcattttctccaactcccatctcttctttctccttcaccaaccca
acactgcccagaaggatttcttcagtaccttctgctgtaaactcaaaaggcgtagccaaa
gatctaatctttaaccacgacggttcagccacaaagaagcttctggcaggcgtggacatg
gtggcagagctggttggggttacgttgggcccaaagggaaggaatgtggtgctgcagaat
aagtatggacctcccaagattgtcaatgacggtgaaactgtcctcaaacagattgagttg
gaggaccctgtggagaatgttggagtgaaattggtgaggcaagctggtgcaaaaacaaat
gatctggctggagatggttccactacagctgtaattcttgctcatggcttaatcactgaa
ggtgtgaaggttactgcagctggcttgaaccccattcaaattgctcgtggcattgagaaa
actgcggcggccctcgtttctgaactcaaattgatatccagagagattgaggatcatgag
cttgcacatgttgctgcagttagtgcaggcaatgattatgctgtggggaatatgatttat
gatgctcttcttcaagtaggaaagaagggtgtggttactattgaacaagggaaatgtaca
gagaacaatctacaaattgtggaaggaatgcagtttgatcgtggatacttatccccttac
tttgtcactgatagaagaagaaggatagtggagtttcaaaactgtaagttacttttggtc
gacaagaaaattacaaacccgaaggagatgtttaaattattggacaatgcagtgcaagaa
aagtatccaatggtgatagttgcagagggcattgagcaggaagctctagctccagtaatt
agaaacaaactcagaggtgtgctgaaagcagctgctattaaagctcctgcctttggtgag
cgcaaaagccactacttagatgacattgccatcttgactggaggaaccgtagtaagagat
gagatggggattatcctagaagatgctggcaaggaggttttgggtactgctactaaggtt
gtgataactaaggattctacattgatagttaccgatggtagcactcgagaagctgttgaa
aagagggtttctcagatacgaaagcttgttgagaacactgaagaagaatttcaaaagaag
atattaaatgaaagaatagcaagattatcagggggagttgctattctgcaggtaggggca
caaacacaagttgagttaaaagataaacaacttagaatcgaagatgctttgaatgcgacc
aaggcagcaattgaggaaggtgttgtagttggtggtggctgcagtcttctgaggctctcc
aaaaaggtggatggtattaaagaacttttggataatgaagaacagaagatcggagcagaa
atcttcaagagagctttaagctatcctgtaaaactgatatcaaaaaatgcaggtgtaaat
ggaaatgttgtagtagagaagattctatctaacgataatatggggtatggatataatgct
gccaaagactgttacgaggacctaatgaaagctgggatcatggatccatcaaaggttgtt
agatgttgtttggagcatgcagcctcagtcgccaaaacttttctgacatccgatgctgtt
gtagtcgacattaaggaaacacagccctttccaagaagaatgccaccaaaactgcccaat
atcccaagaagaatgccaccagaactgcccaatattccaagaagaatgccaccagacctg
cgcaatatcccaagaagaaggccaacaccaatgtccatgtccatgccaaactcaggtgct
ggaccatttggcctttag
DBGET
integrated database retrieval system
