Prunus mume (Japanese apricot): 103342049
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Entry
103342049 CDS
T03196
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103342049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103342049
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103342049
Spliceosome [BR:
pmum03041
]
Complex C
Other components
Step II factors
103342049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
SLFN-g3_helicase
T2SSE
FtsK_SpoIIIE
ATPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
103342049
NCBI-ProteinID:
XP_008243835
UniProt:
A0ABM0PSJ8
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MAQGQGRLNSSTKSPKGNLSDGNRKLDAFSKRQTLAQHRKSLPIASVDKRLVEEVQKHDT
LIIVGETGSGKTTQLPQFLYNAGFCGDGKLIGITQPRRVAAVTVAKRVAEECGVNLGEKV
GYSIRFEDMTSSSTRIKYMTDGLLLREALLDPHLSRYSVIIVDEAHERTVHTDVLLGLLK
SVQDARSKSLNNLQNTKNKKTNNDIQLKENGAQGLNFLKQYQGRTPLKLIIMSASLDARI
FSEYFGGARAVHIQGRQFPVDIFYTLHVENDYLDASLATIFQIHLEEGPGDILVFLTGQE
EIESVERLVKDRLKQLPENSKKLVAVSIFSSLPSEQQMRVFAPAPHGFRKVILATNIAET
SVTISGIKYVIDPGLVKARYYDPNKGLESLVVVPISKAQALQRSGRAGREGPGKCFRLYQ
EDQFGKFEDSTKPEIKRCNLSNIILQLKALGVDDISGFDFIEKPTRSAIVKSLEQLFLLG
ALTDDCKLSNPVGRQMACLPLDPIYSKALILASEFNCLEEMLITVAMLSVESIFYTPRDK
KEESRTTKKSFASSEGDHLTLVNVYRASNEFLEKRSGLSKEKREKAFRKWCKENFIDSRS
LRHARDIHSQIRRNVEQLGLRVASCGDDVIQFCRCLAASFFLNAALKQPEGSYRALANGE
IVSIHPSSVFFKNKPECLIFNELVETNRKYIRNTTRIDYLWLTELAPQFYAVQN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaggtcaaggacggctgaacagctctaccaaaagcccgaaaggaaacttgtcc
gatggtaatcgcaagctcgatgccttttccaagaggcaaacgcttgcgcagcacaggaaa
tctcttccaatcgcttctgtggataaacgactggttgaggaggttcagaagcacgatact
ttgattattgttggtgaaactggaagcggaaaaacaacacaattacctcagtttttgtac
aatgctggattttgcggggatgggaaactcattgggataactcaacctaggcgtgtggct
gccgtgactgtggcaaaacgggttgctgaggaatgtggcgtaaatttgggtgaaaaggtt
ggttactccatcagatttgaggacatgacctctagttcgacaaggatcaagtacatgaca
gatggattgctactgagggaggcactgttggatccacatctctctaggtattcagtcata
attgttgatgaagctcatgagagaactgtccacactgatgtgttgctaggcttgctaaaa
agtgtacaagatgcaaggtcaaaatccctcaataacctccaaaatactaaaaacaagaaa
acaaataatgacatacaattgaaagaaaacggtgctcagggcctcaattttctcaagcaa
taccaaggacggaccccgttgaagttaattatcatgtctgccagcttggatgcacgaatc
ttctctgagtacttcggtggtgcaagagctgttcacatccaagggcggcagtttcctgtg
gatatattttatactcttcatgttgaaaatgattatctagatgcttcgttagccaccata
tttcagattcatctggaggagggccctggtgatatacttgtattcttgacgggtcaagaa
gaaatcgaatctgtagaaagacttgtcaaagacagacttaaacagttaccagaaaacagt
aaaaaactagtggctgtttctatattctcatctcttccttcagaacagcaaatgcgagtt
tttgcaccggcccctcatggatttcgtaaggtaatattggcaacaaatattgctgagaca
tccgtgacaatatctggaataaagtacgttatagatcctgggttagtaaaagcacgttac
tatgacccgaacaaagggttggaatctttggttgttgttccaatttcaaaagcacaagct
cttcaaaggagtgggcgtgcagggcgagaaggaccagggaaatgcttccgcctctaccaa
gaggatcaatttgggaaatttgaggattcaacaaagccagagatcaagcggtgcaacctc
tctaatatcattttgcaacttaaggctctgggtgttgatgatatcagtggctttgacttc
atagaaaagcctacaaggtcggctattgtcaaatcactagagcaattgttcctgctgggt
gctttaacagatgactgtaaattatcaaatcccgttggacgccaaatggcttgccttccc
ttagacccaatttattcaaaagctctaatcctagcaagtgaattcaattgcctggaagag
atgctgataactgttgcaatgctctcagtagaatctatattttatactccccgtgacaaa
aaagaagagtcgagaactacaaagaaatcctttgcaagttcagagggagaccatctcact
ttggttaatgtatatagagcatccaatgagttcttggaaaagagatcaggtcttagtaaa
gagaagcgtgaaaaagctttccgaaaatggtgcaaggaaaatttcattgatagtcgctcc
ctgaggcatgctcgtgacattcacagccaaattcgacgaaatgttgaacaattgggtctt
cgtgttgcctcttgtggtgacgacgtgattcagttttgcagatgccttgcagcttctttc
ttcctcaatgcagctttaaagcagcctgagggatcatacagggctttggcaaacggtgag
atagtttcgatccacccgtcttctgtgtttttcaagaacaaaccagagtgcctaattttc
aatgaactagtcgaaactaatcgtaaatacatccgcaacacaactaggatcgattatttg
tggttaactgagcttgctcctcaattctatgctgtgcagaattga
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