Prunus mume (Japanese apricot): 103342255
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Entry
103342255 CDS
T03196
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103342255
03036 Chromosome and associated proteins [BR:
pmum03036
]
103342255
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103342255
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
103342255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
HTH_44
Tex_central_region
HHH_3
SH2
MRP-S34
DHQS
Motif
Other DBs
NCBI-GeneID:
103342255
NCBI-ProteinID:
XP_008244088
LinkDB
All DBs
Position
Unknown
AA seq
1633 aa
AA seq
DB search
MGKAVVSDEEDEVELDEDEREPHHGDAVDDRDGEDEEDEDEGPDEYEKDDFIVDDVDEEE
EQGEEEDRADSDEERQRKKKRKKKEEYVLDEDDYELLEDNNVIAPRRKAGKFKRLKKAQR
YGEGEPGGLSDEEEFVGSGKSGRTAEEKLKRTLFGDDEGPPLEDIAEEEEPAEAEDDGEV
GEEDEMADFIVDEEFDETGAPVRQRKLKKKKSRQAPGVSSSALQEAHEIFGDVDELLQLR
KQGLDSSEWRERRLEDEFEPIVLSEKYMTEKDDQIRELDVPERMQIYEESTGSPPLDRIS
IDDESTWIYNQLASGTVPLFSKTGLGNSISRDDIIRFLDLHHVQKLDIPFIAMYRKEECL
SLLKDPEHLELEDESQDKNDRPSVLKWHKVLWTIKELDRKWLLLQKRKNALQSYYNKRFE
EESRRIYDETRLNLNQQLFESIMKSLKAAESEREVDDVDTKFNLHFPPGEAGVDEGQYKR
PKRKSLYSICSKAGLWEVASKFGYSSEQFGLQLSLEKMRMDELEDAKETPEEMASDFTCA
MFENPQAVLKGARHMAAVEISCEPCVRKYVRSNYLDIVELSTSPTPDGNVAIDAFHQFAG
VKWLQRKPLNRFEDAQWLLIQKAEEEKLLQVTVKLPEDRLNKLISDFNEYYLSDGVSKSA
QLWNEQRKLILQDALFNFLLPSMEKEARSLLTSRAKNWLLMEYGKVLWNKVSVGPYQRKE
NDSSDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSHNVNDQQRKKND
QERVLKFMTDHQPQVAVLGAVNLSCVRLKDDIYEIIFKMVEENPRDVGHDMDGLSIVYGD
ESLSRLYENSRNSSDQLPAQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPFE
NFLTPDEKYAMVEQVMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVR
SGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQ
ELAKDVYDVDGGNDEEDALEMAIEHVRDRPNYLKNLDVEEYAKTKKRENKIETFCDIRRE
LIQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRRVQAQRAVCALESGLTG
MLMKEDYSDDSRDISELSDRLNEGDILTCKIKSIQKNRYQVFLVCRESELRNNRHQNTQN
LDAYYHEDRRSLQSEQEKAHKEKELAKKHFKPRMIVHPRFQNITADEAMKFLSDKDPGES
IIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKDHKDITSLLRIGKTLKIGEDTFEDLDE
VMDRYVDPLVAHLKSMLNYRKFKRGTKAEVDELLKIEKLEYPMRIVYCFGISHEHPGTFI
LTYIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHESGPSIRSVAAMV
PMRSPATGGSTNEGGWRGQSFDRDRSSTPSSRTGRNDYRNGGSRDGHPSGLPRPYGGRGR
GRGTYNNNRGNSTGNERQDSGYDAPTWGADSKDRDDGLGNFPGAKVQNSPGREAFPGGWG
AGGSGSGGSNWGGGSGSGWGQGSGGAGGWGGAGANDAAADNGTSGWGSDPKIKGSDNGSS
GWGSEPKRGGGGW
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagccgtcgtctctgacgaagaagatgaggtcgagctcgacgaggacgagagg
gaaccccatcacggcgacgcagtcgatgaccgggatggcgaagatgaagaggatgaagac
gaagggccagatgaatatgagaaggatgattttatagtagatgatgttgatgaagaagag
gagcaaggggaggaagaagatagggcagacagtgatgaagagaggcagaggaagaagaaa
agaaagaaaaaagaggagtatgtccttgatgaagatgactatgagctcctagaggacaat
aatgtgattgccccccgaaggaaggctgggaaatttaagcggctgaaaaaagctcagagg
tatggtgagggggagcctggtggattatctgatgaggaggagtttgttggcagtggtaaa
agtggaagaactgcggaggagaagcttaagcgtaccttatttggtgatgatgaaggtcct
ccacttgaggacatagctgaagaagaggaaccagcagaagcagaagatgatggagaagtt
ggtgaagaggatgaaatggcagactttatagttgatgaagagtttgatgagactggagca
cctgtgagacagaggaagcttaaaaagaaaaaatctaggcaggcaccaggagtatcatcc
tctgctttgcaggaagcccatgaaatatttggtgatgttgatgaattactgcagctccgt
aagcaaggtttggattccagtgaatggagggaaaggaggcttgaagatgaatttgaacca
attgttctttctgagaagtatatgacagagaaggatgaccagatccgggagcttgatgtt
ccggaaagaatgcagatatatgaggaaagcactggttctcctccactggatagaattagt
atcgatgatgagagtacctggatttataatcaacttgcaagtggtacagtacctttgttt
agcaagacaggcttggggaattcaataagcagggatgacatcatcagatttttggacttg
catcatgtgcagaagttggacattccctttattgccatgtatcggaaagaagagtgccta
agcttattgaaagatcctgaacaccttgagttggaagatgaaagtcaggataaaaatgac
aggccatctgtactcaagtggcacaaggtgctttggaccattaaggagctggacagaaag
tggctgttgcttcagaagcggaaaaatgctttacaatcttactacaataaacgatttgag
gaagaatctcgacgtatatatgatgaaaccagacttaatttaaatcagcagctttttgaa
tcaattatgaagtcgctgaaggctgcagaatcagagagagaggttgatgatgttgacacc
aagtttaacttgcatttccctccgggtgaggcaggagtggatgagggacagtataagagg
cccaaaaggaaatcactttatagcatctgcagtaaggctggcctgtgggaggtggcaagc
aagtttggttacagctctgagcagtttggactgcaattatctctagaaaaaatgagaatg
gatgagttggaggatgctaaggagaccccagaggagatggcttcggactttacatgtgca
atgtttgagaatcctcaagctgtgctcaaaggagctaggcatatggcagctgttgaaata
agttgcgagccatgtgtcaggaagtatgttcgaagcaactacttggatattgttgagtta
tcaacaagcccaacacctgatggaaatgtggcaatagatgcttttcatcagttcgcaggg
gtgaagtggttgcaaagaaagccattaaatagatttgaggatgcgcaatggctgcttatc
cagaaggctgaagaggagaagcttctccaagttactgttaagttgccagaagacagatta
aataagttgataagcgacttcaatgagtactatcttagtgatggtgttagtaaatctgca
caactgtggaatgagcagcggaagttgatattgcaggatgccctttttaattttcttttg
ccttcaatggagaaagaagcaagatccttgttgactagtagagctaaaaactggttactc
atggaatatggaaaggttctttggaataaagtctctgtgggaccatatcagcgtaaggaa
aatgatagctcagacgatgaagctgcaccgagggtcatggcttgctgttggggccctggg
aagccagcaactacttttgtgatgttagattcatctggggaggtgctagatgtactttac
acggggtcccttactctacgctcccacaatgttaatgatcagcaacgaaagaaaaatgat
caagaacgtgttttgaagttcatgactgatcatcaaccacaagttgctgtcctaggagct
gttaacttgtcttgtgttcgcctaaaagatgatatttatgagataatttttaaaatggtg
gaggagaatcctagagatgttggccatgatatggatggcctaagcattgtatatggggat
gaatctttgtctcgcctgtatgaaaattctcggaattcatctgatcagttacctgcacaa
tcaggcattgtcaagagggctgtggctcttgggcgttatcttcaaaatccgttggcaatg
gttgccacactttgtggaccaggaagagaaatcttatcctggaaactcaatccttttgag
aactttctcaccccagatgagaagtatgcgatggttgaacaggtcatggtagatgtcaca
aaccaggtaggccttgacgtaaatctggctataagccatgaatggttatttgcaccgctg
caatttatttctgggcttggacctagaaaggcagcatctttgcagagatcgttggtaaga
tctggcgcaatatttactcgaaaggattttgtgacagcacacgggcttggtaaaaaggtg
tttgtcaatgcagttggtttcttgcgtgttcggcggagtgggttggctgctagcagcagc
caatttattgatttgttggatgatacgaggattcatccagaatcctatgctcttgcacaa
gaattggccaaagatgtttatgatgtggatggtggcaatgatgaggaggatgctttggag
atggctatagagcatgtcagggatcgacctaattatctaaaaaaccttgacgttgaagag
tatgctaaaaccaaaaagcgtgaaaataagatagaaacattttgtgatataaggagagaa
ttaatacagggttttcaggattggcgtaaacaatatgaagaaccaagtcaggatgaagag
ttctatatgatttcaggtgaaactgaggatacccttgccgaaggaagaattgtgcaggcc
acggttcgcagggtgcaagctcaaagggcagtttgtgctcttgaatctgggttgactggt
atgcttatgaaagaagactattcagatgattccagggatatttctgagttgtctgacaga
ctgaatgagggcgacatcctcacttgcaagatcaaatcgattcaaaagaataggtatcaa
gtgttcctagtttgcagagagagtgagctgagaaataaccgacatcagaacacacagaat
cttgatgcctattaccatgaagaccgaagaagtctacagagtgagcaagagaaagctcat
aaggagaaggagctcgcaaagaagcatttcaagccaaggatgattgttcatcctcgtttc
cagaatataactgcagatgaagcaatgaagttcttgtctgataaggatcctggggaaagt
attattcgtcctagttctcgtgggccttcatatttaaccttaactctcaaggtttacgat
ggagtttatgctcacaaagacatagttgaaggtggaaaggaccataaggacatcacaagc
ttactccgcattggtaagaccctgaaaattggggaggacacatttgaggatttggatgag
gtaatggatcgttatgttgatcctttagtagctcacttgaagtcaatgctaaattatcgc
aagttcaagaggggcacaaaagcagaggttgatgaacttttgaagattgagaagttggag
tatcctatgaggatagtttattgttttgggatatcgcatgaacatccaggcacgttcatt
ctgacctatatacggagtacaaatccacaccatgagtatgttggtttatatcctaaggga
ttcaagttcagaaaaaggatgtttgaggacattgatcggcttgtagcatattttcagcgc
catattgatgaccctcagcatgagtcaggaccatcaattagatcggttgctgctatggtg
ccaatgcggagccctgcaactggtggttcaactaatgagggtggttggagaggccagtct
tttgacagggatcggtcatctacgccgagttcacgaacaggccgaaatgattacagaaat
ggtggcagtagagatggacatccaagtggcctacctagaccatatggtggccgtggccgt
ggtcgaggaacatataacaacaacagagggaatagcacaggcaatgagaggcaggattct
ggttatgatgctccaacatggggtgcagattccaaagacagggatgatggcttgggcaac
tttcctggtgcaaaggtccaaaattcacctggaagggaagctttccctggtggttggggt
gctggtggaagtggcagtgggggcagcaattggggtggtggcagtggcagtggctggggt
caaggaagtggtggagcaggagggtggggtggagctggtgcaaatgatgctgctgctgat
aatgggacttcaggatggggttcagacccaaaaataaaaggttcggataatgggtcttcg
ggatggggttctgaacccaaaagaggtggtggtggttggtga
DBGET
integrated database retrieval system
