Prunus mume (Japanese apricot): 103342524
Help
Entry
103342524 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103342524
09122 Translation
03013 Nucleocytoplasmic transport
103342524
03015 mRNA surveillance pathway
103342524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103342524
03041 Spliceosome [BR:
pmum03041
]
103342524
03009 Ribosome biogenesis [BR:
pmum03009
]
103342524
03012 Translation factors [BR:
pmum03012
]
103342524
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103342524
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103342524
mRNA cycle factors
Stress granule specific factors
103342524
Spliceosome [BR:
pmum03041
]
Complex C
Other components
EJC/TREX
103342524
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
90S particles
Helicases
103342524
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
eIF-4
103342524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
103342524
NCBI-ProteinID:
XP_008244384
UniProt:
A0ABM0PTV4
LinkDB
All DBs
Position
Unknown
AA seq
314 aa
AA seq
DB search
MTDLGSVKTKYMFQETPSAIQQRAVRHIIDGHDVIAQAQSGTGKTSMIALSVCQMVDTSC
REVQALILCPTRELALQTEKVILAVGNFINIQVHACVGGKSVGEDIRKLDNGVHVVCGTP
GRVFDMIKRRTLSTRAIKLLVLDESDEMLSTVFKDQIYDVYRYLPPDLQVCLISATLPRE
ILEMTNKFMTEPVRILVKRDELTLEGIKQFFVSVEREEWKFDTLCDLYDTLTITQAVIFC
NTKRKVDWLTEKLRSNNFTVSSMHGDMPQKEREAITQEFRSGNSRVLITTDVWARGLDKM
RLPQGGAPDVYIIG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgacagatttggggtcggttaaaacgaagtacatgtttcaggagacgccctccgccatc
cagcagcgggcggtgaggcacatcatcgacggccacgatgtgatagcgcaggcgcagtcg
ggtaccggcaagacctccatgattgccctcagcgtttgccagatggtggacacctcctgc
agagaggttcaggcgttgatattgtgccctacgagggaattggcgttacagactgagaag
gtgatcttagcagttggaaacttcataaacatacaagtgcatgcttgcgttggaggcaaa
agtgtgggtgaggatatccgaaagcttgataatggagttcatgtggtttgtggaactccg
ggtagagtctttgacatgatcaagaggagaactctaagcactcgagccattaaattatta
gttctcgacgagtctgatgagatgttaagtacagtattcaaggatcagatttatgatgtc
taccgatatcttccacctgacctccaggtttgcttaatttctgctacacttcctcgtgaa
atcttggagatgaccaacaagtttatgactgaacctgtaaggatccttgtcaaacgtgat
gagttgactttggagggaatcaagcaatttttcgtctccgttgaaagagaagagtggaag
tttgatacgctatgtgatctctatgatactcttacaattacacaagctgttattttctgc
aacacaaagcgaaaggtggactggctcacagagaagctgcggagtaataactttacagtg
tcttcaatgcatggagacatgccccagaaggagagagaagctatcacccaagagtttcgc
agtggcaattctcgggtcctcatcacaacagatgtttgggcacgagggcttgataaaatg
agacttccacaagggggagctccagatgtttacattataggttaa
DBGET
integrated database retrieval system
