Pedobacter mucosus: LOK61_00825
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Entry
LOK61_00825 CDS
T08291
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOK61_00825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuo03019
]
LOK61_00825
Enzymes [BR:
pmuo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOK61_00825
Messenger RNA biogenesis [BR:
pmuo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOK61_00825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
SUa-2TM
ssDNA-exonuc_C
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKT64332
LinkDB
All DBs
Position
complement(216328..217632)
Genome browser
AA seq
434 aa
AA seq
DB search
MLFKELNLIEPILKALETEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML
QLLHEKHINTKASKTIKALILTPTRELAIQIEESFKAYGRHLNLRHLVIFGGVSQHSQVE
SLKKGIDILVATPGRLLDLMNQGFINLNTIELFVLDEADRMLDMGFIHDVKKVVAKLPSK
RQTLFFSATMPDEIQKLANTILNNPTKVEVTPVSSTAETIVQSVYFVDKPDKKKLLIHLL
EDKTIETALVFTRTKHGADRIAKDLGFAGVKAAAIHGNKSQNARQRALTDFKEKKIRVLV
ATDIAARGIDIDQLSHVFNYELPNVPESYVHRIGRTGRAGANGIAISFCDAEENEYLIDI
QKLIKITLPVVEDHPYPLSWQSMMAKNQIKRKPQGNSKGGGGGGARKSGDGNMSGKPRNA
SSQRKFGGNRRTRD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaaagaattaaacctcattgagccgattttaaaggcccttgagactgaaggt
tatacacaacctacccccattcaagagcaatctatacccacaatattaaaaggaaaagac
ttacttggatgcgcacaaacaggtacaggaaaaactgctgcattcgcaattccaatgttg
cagttactgcacgaaaaacacattaacactaaagcatcaaaaacaataaaagcgttaatt
ttgacgcctacaagagagcttgctatccaaattgaagaaagttttaaagcttatggccgt
catttaaatttacgccatttggttattttcggtggcgttagtcaacattcgcaagtagaa
agcttaaaaaaaggaatcgacattttagtagctacgccaggtcgtttactagatttaatg
aaccaaggttttataaatttaaatacgattgagcttttcgttttagatgaagcggatagg
atgttggacatgggttttattcacgatgtgaaaaaagttgtcgccaaattaccttcgaaa
cgccaaactttatttttctcggctaccatgccagatgaaattcaaaaattagcaaacacc
attttaaataatcctactaaagttgaagttactccagtatcatcaaccgctgaaacgatt
gttcaatctgtttattttgttgataaaccagataaaaagaagttattaatccatttgttg
gaagacaaaacgattgagactgcgctcgtttttacccgtactaaacatggtgcagataga
atcgctaaagacttaggttttgctggtgttaaagctgctgccattcatggtaacaagtct
caaaatgccagacaaagggctttaactgactttaaagaaaagaaaattcgtgttttagtt
gctacagatattgctgcccgtggtattgatattgatcagttatcgcacgttttcaactat
gaattaccgaatgttccggaatcttatgtacataggattggtcgtactggtcgtgcaggt
gcaaacgggattgcaatttcattttgcgatgcagaggagaacgaatatttaattgatatt
caaaaattaatcaaaattacgcttcctgttgtggaagatcatccatatcctttgtcttgg
caaagtatgatggcgaaaaaccaaataaaacgcaaacctcaaggtaattctaaaggtggc
ggaggcggtggcgctagaaaaagtggcgatggcaatatgagtggaaaacctcgtaatgca
agtagtcaacgtaaatttggcggcaatagaagaacgagagattaa
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