Pedobacter mucosus: LOK61_04085
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Entry
LOK61_04085 CDS
T08291
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOK61_04085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmuo03021
]
LOK61_04085
Transcription machinery [BR:
pmuo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOK61_04085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
HTH_11
Sigma70_ECF
HTH_23
Sigma70_r2
HTH_29
HTH_24
UPF0122
GerE
HTH_5
PF0610-like_N
HTH_20
MarR
HTH_Tnp_ISL3
HTH_40
HTH_17
wHTH_Par
HTH_10
HTH_28
HTH_DeoR
HTH_38
HTH_25
HTH_Mga
HTH_AsnC-type
NUMOD1
HTH_36
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UKT64957
LinkDB
All DBs
Position
complement(962409..962993)
Genome browser
AA seq
194 aa
AA seq
DB search
MSISKLSDLELLQSTICNNEQAFNELFERHWSRVYMVSLRYVKDEAMAMEITHDVFMNIW
NKRDTLTISCFRNYVLAAASYHGIKKIRQKKSISLKYIERYQHDGESVLNEQVSNNNEGH
EKMLMEELDAKVLNSLAELPKRCREIYLLSRKEELSISEIAEKLNISKRTVENQITIALK
HLKALLKNNYLFFL
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcagtaaactttctgatcttgaattattacaaagcaccatttgtaataatgaa
caagccttcaatgaactctttgagcgtcattggtcgagagtttatatggtatccttaagg
tacgtaaaggatgaggcaatggctatggaaattactcacgatgtattcatgaatatttgg
aataaacgcgatacgcttactatttcatgcttcagaaattatgtattagccgctgccagt
tatcatggtattaaaaaaattcggcaaaaaaagtccatatcactaaaatatattgagcgt
taccaacatgatggcgaaagtgttttgaatgaacaagtttccaataataatgaaggtcac
gaaaaaatgttaatggaagagttagatgctaaagtccttaattctttagcggaattacca
aaacgttgccgtgaaatttatttactaagtagaaaagaagagctaagtatatctgaaatt
gctgaaaaattaaacatatctaaaagaaccgtagaaaatcaaattaccattgcgttaaag
catttaaaagccctgcttaaaaacaactatctattctttttgtag
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