Pedobacter mucosus: LOK61_04915
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Entry
LOK61_04915 CDS
T08291
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo02020
Two-component system
pmuo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOK61_04915 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LOK61_04915 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmuo03021
]
LOK61_04915 (rpoN)
Transcription machinery [BR:
pmuo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOK61_04915 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
DUF1474
MarR
HTH_12
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UKT65120
LinkDB
All DBs
Position
complement(1179323..1180792)
Genome browser
AA seq
489 aa
AA seq
DB search
MLKQHLQQKLLQKLSPQQIQFIKLLQVPTVALDTRVKEELEENPALEDPSLMTQDEPKSE
YDDLNDVPDDYEKSSEDNSSDEFNVDDYLQDDNTNDYSTNYNNGDDDEEKKETPIAIEST
FFESLQEQLDLVPLSDQDFIIGKQIIGSLDDDGYLRRALGSMIDDLAFSQNVMVEEEDVL
DMLKLIQSFDPPGIGARDLKECLLIQLKRKETNPIIVKAMNVVENYLDEFTRKHYDKLEK
SLGLDNDELKEVVNEILRLNPKPGDANQVTTKQMQIIPDFHISNNDGVLILTLNSKNAPE
LKVSRSYLEMFEHYDKASSKDKKLKEAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNAIM
HYQYEYLLTADERKMRPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEAI
QTESGEEVSNKEVKKILEDCIGSEDKRKPLADEKLTDILKERGYNIARRTVAKYREQMNI
PVARLRKEL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcaacatttacaacaaaaattattacaaaagttatcgcctcagcaaatacag
ttcataaaacttttgcaggttccaactgtagccttagatacccgtgttaaagaagaattg
gaagaaaatcctgccttagaggacccaagtttaatgactcaggatgagcctaaaagcgaa
tatgatgatttgaatgatgttccggatgattatgaaaaatcttcagaagataatagctct
gatgagtttaatgtggatgattatttacaggacgataatacgaatgattatagcaccaac
tacaataatggtgatgatgacgaggagaagaaagaaactcccattgctattgaaagcaca
ttttttgaaagtttacaggaacaattagatctggttccactttcagatcaggattttatt
attggaaagcagatcattggcagtttagatgatgatggttatttaaggcgggcattagga
tcaatgattgatgatcttgctttttctcagaacgtaatggttgaggaagaagatgtttta
gatatgttaaaacttattcaaagctttgatcctccaggtattggtgccagagatttaaaa
gaatgcttgcttattcaattaaaaagaaaagaaacaaatccgataatagttaaagcaatg
aatgttgtggaaaattatttggatgaatttacccggaagcattacgataaattggaaaaa
agtttaggtttggataacgatgaacttaaagaagttgtaaacgaaatattgcgtttaaac
cctaagccaggtgatgcaaaccaggttacaaccaagcagatgcagattattcctgatttt
catatcagcaataatgacggcgttttaattttaaccttgaattcaaaaaatgcgcctgag
ctaaaggttagtcgctcttatttagagatgtttgaacattatgataaagcatcatctaaa
gataaaaaactaaaagaagccgtacagtttgtaaaacaaaaattagattctgctaaatgg
tttatagatgcgattaaacaacgccagcaaactttattaaaaaccatgaatgcgataatg
cattatcagtatgaatatttgcttactgcagatgagcgtaaaatgcgcccaatgatttta
aaagatattgctgataaaattgatatggatatttcaaccgtatcgagggttgcgaactct
aaatatgttcaaacagaatttggcacatttttattaaaatcttttttctccgaagctatt
caaacagagagtggtgaagaagtatccaacaaagaagtaaagaaaattttggaagattgc
attggaagtgaagataaacgtaagcctttagccgacgaaaaattgactgatattttaaag
gaaaggggttataatatagcgagaagaactgttgcaaaatatagggaacaaatgaatatt
ccggttgcacgacttagaaaagaactttaa
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