Pedobacter mucosus: LOK61_05280
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Entry
LOK61_05280 CDS
T08291
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOK61_05280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuo03019
]
LOK61_05280 (rnr)
03016 Transfer RNA biogenesis [BR:
pmuo03016
]
LOK61_05280 (rnr)
Enzymes [BR:
pmuo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LOK61_05280 (rnr)
Messenger RNA biogenesis [BR:
pmuo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOK61_05280 (rnr)
Transfer RNA biogenesis [BR:
pmuo03016
]
Prokaryotic type
tRNA degradation factors
LOK61_05280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
RcpB
Motif
Other DBs
NCBI-ProteinID:
UKT65192
LinkDB
All DBs
Position
complement(1252779..1254911)
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AA seq
710 aa
AA seq
DB search
MAKKKSANIKLVLNQLVSDVFEKNENQALNYKQVSAKLNLNDQESRDTILEILKDGKSVG
TYLEPEKGKFKLKDLQNFIIGKVDMTADGSAYIIPDDEFEKDIRVAPRKLKNALHGDAVK
VYVFAKRHGSKRDGEVIEIIKRAKSDFTGVIKISDRFAFVIADDKKMMHDIFIPLGDILG
AKNGQRVLVTLADWPENAKNPIGVVKHVLGDQGENNTEMNAILAQYGFPLSFPPQVEKEA
NAIPEEITDAEIAKRKDFRKVLTFTIDPADAKDFDDAISYQKLPNGNHEIGVHIADVSHY
VIQGTDLDKEAYSRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDEQANI
QAEWYGRTVIHSDRRFSYEEAQEVIENKTGDCATEILKLNELAYILRDRKFKNGAISFES
TEVKFKLDDSGKPIGVYVKERKDAHKLIEDYMLLANRKVAEFVAKKVKGEKKLTFVYRSH
DSPNMETLNTFATFASRFGYKINTKSDKEIAKSLNHLMADVEGKKEQNILTSLAIRSMAK
AIYSTKKTSHYGLAFEYYTHFTSPIRRYPDVMAHRLLQTYLDGGKSADAEFYEVASVHSS
AMEKRAAEAERASIKYKQAEYLENNIGTEYKGIISGVTEWGMYVEIEENKCEGMIRLRDI
SDDFYVLDEKNYCIIGQRKKNKYQLGDEVMIRVKKVDLSKRQIDFTLIPN
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaaatctgcgaatataaaattagttctaaatcaattggttagtgatgtt
tttgaaaagaacgaaaatcaagcattaaattataagcaagtttctgccaaattgaacctg
aatgatcaagaatctagagataccattcttgaaattttaaaagatggaaaaagtgttggt
acttatttagaacctgaaaaaggcaaattcaaacttaaagatcttcaaaactttataatc
ggcaaggttgatatgacggccgatggttcagcctatattattcctgatgatgaatttgaa
aaagatatacgtgtagcacctagaaaactcaaaaatgcgcttcacggagacgctgttaaa
gtatatgtttttgcgaaaagacatggtagcaaacgtgatggtgaggttattgagattatc
aaaagggcaaaatcagattttactggcgtaataaaaatttcagatcggtttgctttcgtt
atcgctgatgataaaaaaatgatgcatgatatttttattccattaggagatattcttggt
gcaaaaaacggtcagcgagttttagtaacgctagcagattggccagaaaatgctaaaaac
cctattggagtagtgaaacatgttctcggcgatcaaggtgaaaacaacaccgaaatgaat
gcaatattagcacagtatggctttccactttctttcccgccacaagttgaaaaggaagca
aatgctatccctgaagaaattactgatgctgaaatagctaaacgtaaggactttagaaaa
gtgcttacttttaccatagatcccgctgatgccaaagattttgatgatgccatttcatat
caaaaattacccaatggaaaccatgaaattggtgttcacattgccgatgtttcacattac
gttattcaaggtacagatttagataaggaagcttacagtcgtgcaacttcggtttatttg
gtagatcgggttattcctatgctgcctgagagactaagtaatggcgtatgttcacttcgt
ccacatgaagataaattatgttttgcggcggtttttgaattggatgaacaagcaaatata
caagcagaatggtatggaagaacggtaatccattcagatagaaggtttagttatgaagaa
gctcaggaagtaatcgaaaataaaactggtgattgtgctacagaaatattaaaacttaac
gaactggcatatattcttcgagatagaaaattcaaaaatggagcgatcagctttgaaagt
actgaagtcaagtttaaactggacgattctggtaaacctattggcgtttatgtaaaagaa
cgtaaggatgcccataaactgatagaagattatatgcttttggccaacagaaaagtagct
gagtttgttgctaaaaaagttaaaggcgaaaagaaacttacgtttgtttatcgctctcac
gattctccaaacatggaaacgcttaatactttcgcaaccttcgcatcacgttttggttat
aaaatcaacacgaaatctgataaggaaattgccaagtcattaaatcatttaatggctgat
gtggaaggcaaaaaagagcaaaatatattaacttctttggccatccgttctatggctaaa
gcaatttattcgacaaaaaagacaagtcattatggtttggcttttgaatattatacccat
tttacttctccaattcgccgctatcctgacgtaatggcgcatcgccttttacaaacttat
ttagatggtggcaaatctgctgatgctgagttttatgaagtagcatcggtacattcttct
gcgatggaaaaaagagccgcagaagctgaaagagcatccataaaatataaacaggcagag
tatttagaaaataatattggaactgaatataaagggattatttctggcgttaccgaatgg
ggaatgtatgttgaaatagaagaaaataaatgtgaaggcatgattcgactaagagatatt
tctgatgatttttatgttttggatgaaaagaattattgcattatcggacaaagaaaaaag
aacaagtatcaacttggtgatgaggtgatgattagagtgaagaaagttgatctttctaaa
cgtcagattgattttaccttaatacccaattaa
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