Pedobacter mucosus: LOK61_05475
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Entry
LOK61_05475 CDS
T08291
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmuo
Pedobacter mucosus
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmuo03032
]
LOK61_05475 (topA)
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_05475 (topA)
Enzymes [BR:
pmuo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LOK61_05475 (topA)
DNA replication proteins [BR:
pmuo03032
]
Prokaryotic type
DNA Topoisomerases
LOK61_05475 (topA)
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LOK61_05475 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
FGase
Motif
Other DBs
NCBI-ProteinID:
UKT65231
LinkDB
All DBs
Position
complement(1317218..1319764)
Genome browser
AA seq
848 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMGIDINNNFAQTYEVPADK
KNVVAELKKLAKEAEMVWLASDEDREGEAISWHLFETLGLKVEKTKRIVFHEITKPAILK
AIDSPRGIDYNLVFAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVQHFNAAAAFKITAQFSTGKGKETVKAELPQRFESEATAEKFLQDCANAKFDITSLETK
PAKRNPAAPFTTSTLQQEASRKLGFSVARTMQVAQRLYEAGKITYMRTDSLNLSETALTA
AAAEIKSAYGNEYHQHRIYKTKTAGAQEAHEAIRPTYFNVHTVDGDISEKRLYDLIWKRA
IASQMSEALFEKTTAQITASTRKEHLVAEGEVLKFDGFLKVYLESTDDEETEEKEGGSIL
PPLAKGQELFLKEMQATERYSRPPARYTEASLVKKLEELGIGRPSTYAPTISTVQNRGYV
VKEDRDGKQRKFTAIILADGKVNTEIKTEITGAEKQKLFPTDIGEVVNDFLVEHFKGIVD
FNFTAKVEKEFDEIAQGLQEWTKMLHSFYSPFHTEVQTTLDTAERATGERLLGLDPVTGK
NVYTKVGKFGPLVQIGEADDEEKPKYASLMKNQSVGTITLPEALELFRLPFQLEDYDGKE
VVIGVGRFGPYVKWGESFISMPKNEEPLAVTHERAVEIIKQKIDDDAPIAHYDGLGVTKG
KGRFGPFIKWNDLFINIPAKGYDFDNLSQEDIDTLIGKKVEKEANRFIKVWDEEKISIEN
GRWGPFIRFGKLMLKLRYNEATKAKYTAEELVDVDLEIIKKMIVEQVPKAFETKKKAPAK
KKAAVKKK
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaatttattaatcgtcgaatcacccgcaaaagctaaaactatagaaggttat
ttagggaaagatttcctagtgaaatccagctatggccatatccgagatttagtgaaaggc
gatatgggcatcgacattaataataatttcgctcaaacctatgaagtaccggccgacaag
aaaaatgtggtcgccgaattaaaaaagttagccaaggaagccgaaatggtatggttagca
tccgatgaagaccgtgagggagaagccatttcttggcatttattcgaaactttaggccta
aaagtggagaaaaccaagcgcatcgtttttcatgagattaccaaaccagcaattcttaaa
gcaattgatagtccgcggggaattgattataatttggtttttgcacaacaagctcgtcgt
gttttagatagattggtaggttttgaactgtctcctgttttatggaaaaaagtaaaacca
tcactttcagcaggccgcgttcaatctgtagccgttcgtttaattgttgatagagaaaga
gaagttcagcactttaatgctgctgctgcttttaaaatcactgctcagttttcgactgga
aaaggaaaagaaaccgtaaaggcagaattgccacaacgttttgaaagtgaagctactgca
gaaaagtttttacaagactgtgcgaatgccaagttcgacattacaagtttggaaactaaa
cctgccaaacgtaatccagcggctccatttaccacttcaacattgcaacaggaagcatca
agaaaattaggtttttcggttgccagaaccatgcaagttgcacaaaggttatacgaagcc
ggtaagattacttacatgagaacggattcgctaaatttatcagaaaccgctttaacagcc
gcagcggcagaaataaaatctgcttatggaaacgaatatcaccaacacagaatttataaa
acaaaaactgcaggtgcacaagaagctcacgaagccattcgcccaacttattttaatgta
cacaccgtagatggtgatatttctgaaaaacgtttatacgatttaatttggaaaagggca
attgcatcgcaaatgagcgaggctttatttgaaaaaactactgctcaaattactgcatca
accagaaaagaacatttggttgctgaaggtgaagttttaaagtttgatggatttttaaag
gtttacttagaatcgacagatgatgaggaaactgaagaaaaagaaggtggttcaatttta
cctccgttagcgaaaggacaagaattattcttaaaagaaatgcaagctacggaacgttat
tctcgtccgccggcaagatatactgaggccagcttggttaaaaaactggaagaattaggt
attggtcgtccttctacttatgcaccaaccatttctacagtccaaaatcgcggctatgta
gttaaggaagatagagacggaaaacagcgtaaatttactgcgatcattttagctgatggt
aaagtaaatacagaaataaaaactgaaattacaggagctgaaaagcaaaaactttttcca
actgatatcggcgaagtggtaaatgatttcttggtggaacattttaaaggaattgtagat
tttaatttcacggcaaaagtagagaaggaatttgacgaaattgctcaaggtttacaagag
tggactaaaatgttgcactctttttatagccctttccatactgaagttcaaactactttg
gatactgccgaacgtgcaacaggcgaacgtttgctaggtttagacccagttacaggtaaa
aacgtttatactaaagttggtaaatttggtccattagttcaaattggcgaagccgacgat
gaggagaaaccaaagtatgcaagcttaatgaaaaatcaatcggttggtaccattacgcta
cccgaagctttagaattgttcagacttcctttccaattggaagactatgacggtaaggaa
gttgtaattggtgttggccgcttcggaccttatgttaaatggggcgaaagctttatttct
atgcccaaaaatgaggagcctttagccgttacacacgaaagagctgttgaaattattaaa
caaaaaatagatgatgatgcgccaattgcacattatgacggcctaggcgttacaaaagga
aaaggccgatttggtccttttataaaatggaacgatttgtttattaatataccggcaaaa
ggttatgacttcgacaatctttcgcaggaagatattgataccctaattggtaaaaaggta
gaaaaagaagccaacagatttattaaggtatgggacgaggaaaaaatttcaatcgaaaat
ggtcgttggggtccttttatccgtttcggaaaactgatgcttaagcttagatataatgag
gcgactaaagcaaaatatactgcagaagaattagttgatgtcgatttagaaattatcaaa
aaaatgattgtggaacaagttcctaaagcttttgaaactaaaaagaaggcaccagcaaag
aagaaagcagcagtaaaaaagaagtaa
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